BtaEX6038712 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003491 | SLC25A23
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 23 [Source:HGNC Symbol;Acc:HGNC:19375]
Coordinates
chr7:19238157-19239665:+
Coord C1 exon
chr7:19238157-19238268
Coord A exon
chr7:19239254-19239412
Coord C2 exon
chr7:19239503-19239665
Length
159 bp
Sequences
Splice sites
3' ss Seq
CCCAGCCTCTGCATCCCCAGGTC
3' ss Score
7.91
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
CATGGACCGTGATGGCACCATGACCATTGACTGGCAGGAGTGGCGTGACCACTTCCTGTTGCATTCGCTGGAGAACGTGGAAGATGTGCTGTATTTCTGGAAGCATTCCACG
Seq A exon
GTCCTGGATATTGGTGAGTGCCTGACTGTCCCGGATGAGTTCTCGGAGCAGGAGAAGCTGACTGGCATGTGGTGGAAGCAGCTGGTGGCGGGTGCGGTGGCGGGGGCTGTGTCCCGAACAGGCACAGCCCCTCTGGACCGCCTCAAGGTCTTCATGCAG
Seq C2 exon
GTCCACGCCTCTAAGACCAACCGGCTGAACATCCTGGGGGGCCTCCGGAGCATGATCCAAGAGGGGGGCGTGCACTCCCTGTGGCGTGGCAACGGGATTAATGTGCTCAAGATTGCACCTGAGTCGGCAATCAAGTTCATGGCCTATGAGCAGGTGGGGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003491-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(26.1=47.4)
A:
PF0015322=Mito_carr=PU(35.6=60.4)
C2:
PF0015322=Mito_carr=FE(60.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCACCATGACCATTGACTG
R:
GCCATGAACTTGATTGCCGAC
Band lengths:
243-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]