MmuEX6078684 @ mm9
Exon Skipping
Gene
ENSMUSG00000011486 | Slc25a41
Description
solute carrier family 25, member 41 [Source:MGI Symbol;Acc:MGI:2144215]
Coordinates
chr17:57177953-57180724:-
Coord C1 exon
chr17:57180619-57180724
Coord A exon
chr17:57179241-57179396
Coord C2 exon
chr17:57177953-57178105
Length
156 bp
Sequences
Splice sites
3' ss Seq
AGCAGCGGCTGTTCTTGCAGGTT
3' ss Score
6.46
5' ss Seq
CAGGTTTGT
5' ss Score
7.44
Exon sequences
Seq C1 exon
CCTACCCTACCACCATCTGAAGCATGGAACCCAAGGTGCACACACATGTATGAGTATGTTTGGACATGTGGGTGAGAACAACCCTGAGCATCCTTCATCATAGCAG
Seq A exon
GTTCTGGACACGGGAGAGCAGCTGATGGTCCCTGTGGATGTCTTGGAAGAGGAAAACAAGGGGACCCTGTGGAAGTTTCTGCTCTCTGGAGCCATGGCTGGGGCAGTGTCTCGCACAGGGACAGCACCTCTGGACAGAGCCAGGGTGTACATGCAG
Seq C2 exon
GTGTACTCCTCCAAGAGCAACTTCAGAAACCTGCTGAGTGGACTGCGGAGCCTGGTCCAGGAGGGCGGCGTCCGCTCCCTCTGGCGGGGCAATGGCATCAACGTGCTCAAGATCGCCCCAGAGTATGCTATCAAGTTCTCTGTCTGTGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011486-'1-2,'1-1,2-2=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0015322=Mito_carr=PU(35.1=63.5)
C2:
PF0015322=Mito_carr=FE(53.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCTACCACCATCTGAAGCA
R:
TGCTCACAGACAGAGAACTTGA
Band lengths:
255-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: