MmuEX0042928 @ mm9
Exon Skipping
Gene
ENSMUSG00000011486 | Slc25a41
Description
solute carrier family 25, member 41 [Source:MGI Symbol;Acc:MGI:2144215]
Coordinates
chr17:57179241-57181077:-
Coord C1 exon
chr17:57180997-57181077
Coord A exon
chr17:57180619-57180724
Coord C2 exon
chr17:57179241-57179396
Length
106 bp
Sequences
Splice sites
3' ss Seq
CTACCCCCACCCCTCTCCAGCCT
3' ss Score
6.15
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
AGCTGGGAGCCAGATAGACGCCCCAGAGGACGCTGAGACTGGGACCTTAATCCTTCAGCAACTATGGGAGTCCATCTCGAG
Seq A exon
CCTACCCTACCACCATCTGAAGCATGGAACCCAAGGTGCACACACATGTATGAGTATGTTTGGACATGTGGGTGAGAACAACCCTGAGCATCCTTCATCATAGCAG
Seq C2 exon
GTTCTGGACACGGGAGAGCAGCTGATGGTCCCTGTGGATGTCTTGGAAGAGGAAAACAAGGGGACCCTGTGGAAGTTTCTGCTCTCTGGAGCCATGGCTGGGGCAGTGTCTCGCACAGGGACAGCACCTCTGGACAGAGCCAGGGTGTACATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000011486_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0015322=Mito_carr=PU(35.1=63.5)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGAGCCAGATAGACGCC
R:
CTGCATGTACACCCTGGCTCT
Band lengths:
234-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: