DreEX6046381 @ danRer10
Exon Skipping
Gene
ENSDARG00000008568 | slc25a24
Description
solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24 [Source:ZFIN;Acc:ZDB-GENE-040912-183]
Coordinates
chr20:34758180-34761398:-
Coord C1 exon
chr20:34761287-34761398
Coord A exon
chr20:34758556-34758714
Coord C2 exon
chr20:34758180-34758332
Length
159 bp
Sequences
Splice sites
3' ss Seq
TCACCTTTGTTGTGGGTTAGGTG
3' ss Score
8.13
5' ss Seq
CAGGTACAA
5' ss Score
7.09
Exon sequences
Seq C1 exon
CATTGATGTGGATGGAACCATGACTCTGGACTGGAATGAATGGAGGGAGCATTTCCTCTTTAACCCTGCAGAAGATCTTCAGCAGATCATACGCTACTGGAAAAAATCAACT
Seq A exon
GTGTTGGACATAGGTGACAGTCTGACTATACCAGATGAGTTCACCGAGGAGGAGAAGACCACCGGCATGTGGTGGAAACAGCTTGCTGCTGGTGGTGTGGCAGGGGCAGTCTCTCGAACAGGCACCGCCCCCCTTGACAGAATGAAAGTCTTCATGCAG
Seq C2 exon
GTTCATTCCTCAAAAACCAACAAAATCAGTCTGGTGAACGGGTTCAAGCAGATGATTAAAGAAGGGGGCGTGGCCTCTCTGTGGAGGGGTAACGGAGTCAACGTTATAAAAATCGCCCCAGAAACTGCAATCAAGTTCATGGCTTATGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008568-'3-6,'3-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(27.7=47.4)
A:
PF0015322=Mito_carr=PU(35.1=62.3)
C2:
PF0015322=Mito_carr=FE(53.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATGTGGATGGAACCATGACT
R:
GATTGCAGTTTCTGGGGCGAT
Band lengths:
242-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]