BtaEX6016204 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003752 | SLC25A24
Description
Bos taurus solute carrier family 25 (mitochondrial carrier; phosphate carrier), member 24 (SLC25A24), mRNA. [Source:RefSeq mRNA;Acc:NM_001099066]
Coordinates
chr3:35175601-35182949:+
Coord C1 exon
chr3:35175601-35175712
Coord A exon
chr3:35179967-35180125
Coord C2 exon
chr3:35182797-35182949
Length
159 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTCCATTTTAACAGGGT
3' ss Score
10.65
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CATTGATGCCGATGGGACAATGACAGTGGACTGGAATGAATGGCGAGACTACTTCTTATTTAACCCCGTTACAGATATTGAGGAAATCATCCGTTTCTGGAAACATTCTACT
Seq A exon
GGTATTGACATAGGAGATAGTTTAACTATTCCAGATGAATTCACAGAAGATGAAAAAAAGTCGGGACAGTGGTGGAGGCAGCTTTTGGCAGGAGGTGTTGCCGGGGCCGTCTCTCGGACAAGCACGGCCCCTCTGGATCGTCTGAAAGTCATGATGCAG
Seq C2 exon
GTCCATGGATCAAAATCAGCAAAAATGAACATATATGGAGGCTTTCAACAGATGGTGAAAGAAGGAGGTATCCGCTCGCTTTGGAGAGGAAATGGTACAAATGTCATTAAAATTGCTCCTGAGACAGCTGTTAAGTTCTGGGCGTATGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003752-'6-7,'6-5,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(27.3=47.4)
A:
PF0015322=Mito_carr=PU(35.1=62.3)
C2:
PF0015322=Mito_carr=FE(53.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGACAATGACAGTGGACTG
R:
CGCCCAGAACTTAACAGCTGT
Band lengths:
244-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]