MmuEX6073504 @ mm10
Exon Skipping
Gene
ENSMUSG00000040322 | Slc25a24
Description
solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24 [Source:MGI Symbol;Acc:MGI:1917160]
Coordinates
chr3:109154994-109158644:+
Coord C1 exon
chr3:109154994-109155105
Coord A exon
chr3:109156881-109157005
Coord C2 exon
chr3:109158498-109158644
Length
125 bp
Sequences
Splice sites
3' ss Seq
GGATAGTTTAACTATTCCAGATG
3' ss Score
3.14
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CATCGACTCTGATGGGACGATGACCGTGGACTGGAATGAATGGAGGGATTACTTTTTATTTAACCCTGTGACAGACATTGAGGAAATTATCCGTTTCTGGAAACACTCTACT
Seq A exon
ATGAATTCACAGAAGATGAGAAAAAATCAGGACAGTGGTGGAGGCAGCTCCTGGCAGGAGGTGTGGCGGGCGCCGTCTCTAGAACGAGCACCGCTCCTTTGGATCGCCTCAAGGTCATGATGCAG
Seq C2 exon
GTTCATGGTTCCAAATCAATGAATATATTTGGAGGCTTTCGGCAGATGGTAAAGGAAGGAGGAATCCGTTCCCTTTGGAGAGGAAATGGCACCAATGTCATCAAAATAGCTCCCGAGACAGCTGTGAAGTTCTGGGCTTATGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040322-'11-9,'11-8,12-9
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(27.3=47.4)
A:
PF0015322=Mito_carr=PU(35.9=62.3)
C2:
PF0015322=Mito_carr=FE(52.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGACTCTGATGGGACGATGA
R:
GAACTTCACAGCTGTCTCGGG
Band lengths:
242-367
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types