MmuEX6073504 @ mm9
Exon Skipping
Gene
ENSMUSG00000040322 | Slc25a24
Description
solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 24 [Source:MGI Symbol;Acc:MGI:1917160]
Coordinates
chr3:108957912-108961562:+
Coord C1 exon
chr3:108957912-108958023
Coord A exon
chr3:108959765-108959923
Coord C2 exon
chr3:108961416-108961562
Length
159 bp
Sequences
Splice sites
3' ss Seq
ATCTCTTTCCATTCCACCAGGGA
3' ss Score
10.32
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
CATCGACTCTGATGGGACGATGACCGTGGACTGGAATGAATGGAGGGATTACTTTTTATTTAACCCTGTGACAGACATTGAGGAAATTATCCGTTTCTGGAAACACTCTACT
Seq A exon
GGAATTGACATAGGGGATAGTTTAACTATTCCAGATGAATTCACAGAAGATGAGAAAAAATCAGGACAGTGGTGGAGGCAGCTCCTGGCAGGAGGTGTGGCGGGCGCCGTCTCTAGAACGAGCACCGCTCCTTTGGATCGCCTCAAGGTCATGATGCAG
Seq C2 exon
GTTCATGGTTCCAAATCAATGAATATATTTGGAGGCTTTCGGCAGATGGTAAAGGAAGGAGGAATCCGTTCCCTTTGGAGAGGAAATGGCACCAATGTCATCAAAATAGCTCCCGAGACAGCTGTGAAGTTCTGGGCTTATGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040322-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(27.3=47.4)
A:
PF0015322=Mito_carr=PU(35.9=62.3)
C2:
PF0015322=Mito_carr=FE(52.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCGACTCTGATGGGACGATGA
R:
GAACTTCACAGCTGTCTCGGG
Band lengths:
242-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: