GgaEX6043414 @ galGal3
Exon Skipping
Gene
ENSGALG00000001938 | E1BW83_CHICK
Description
NA
Coordinates
chr8:1196774-1200120:-
Coord C1 exon
chr8:1200009-1200120
Coord A exon
chr8:1197266-1197424
Coord C2 exon
chr8:1196774-1196926
Length
159 bp
Sequences
Splice sites
3' ss Seq
TTTGCTTTGGATTCTAATAGGTG
3' ss Score
7.15
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
TATTGATGCTGATGGAACAATGTCAGTAGATTGGAATGAGTGGAGAGATCATTTTATGTTTAACCCCGCTACAGACATAGAGGAAATAGTCCGGTATTGGAAACATTCCACT
Seq A exon
GTGCTGGATATTGGAGATAGTTTGACTGTTCCAGATGAGTTCACAGAGGAAGAAAAAAAGAGCGGACAATGGTGGAAGCAGCTCCTAGCAGGAGGAGTGGCTGGTGCTGTCTCACGAACAGGTACAGCACCTCTAGATCGTCTAAAAGTAATGATGCAG
Seq C2 exon
GTTCATGGTTCAAAGTCAAACAAAATGAATATTGCCAGTGGTTTTAAGCAAATGCTGAAAGAAGGTGGTGTTCGATCACTGTGGAGAGGAAATGGTGTCAATGTTGTCAAAATAGCTCCTGAGACAGCTATTAAGTTCTGGGCTTATGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001938-'3-5,'3-4,6-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
PF137911=Sigma_reg_C=PD(0.8=2.6),PF102234=DUF2181=PD(10.7=34.2),PF134991=EF-hand_7=PD(28.4=50.0)
A:
PF0015322=Mito_carr=PU(35.1=62.3)
C2:
PF0015322=Mito_carr=FE(53.2=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAACAATGTCAGTAGATTGGA
R:
GCCCAGAACTTAATAGCTGTCTCA
Band lengths:
243-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]