RnoEX0081866 @ rn6
Exon Skipping
Gene
ENSRNOG00000020470 | Slc25a24
Description
solute carrier family 25 member 24 [Source:RGD Symbol;Acc:1311982]
Coordinates
chr2:211950151-211953986:+
Coord C1 exon
chr2:211950151-211950262
Coord A exon
chr2:211952160-211952318
Coord C2 exon
chr2:211953840-211953986
Length
159 bp
Sequences
Splice sites
3' ss Seq
ATCTCTTTCCATTTGACCAGGGA
3' ss Score
8.01
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CATCGACTCTGACGGGACCATGACCGTGGACTGGAATGAATGGAGGGATTACTTTTTGTTTAACCCTGTGACAGACATTGAGGAAATTATTCGTTTCTGGAAACACTCTACT
Seq A exon
GGAATTGACATAGGCGATAGTTTAACTATTCCGGATGAATTCACAGAAGATGAGAAAAAATCAGGACAGTGGTGGAGGCAGCTCCTGGCAGGAGGTGTGGCTGGCGCTGTCTCCAGGACAAGCACCGCTCCTTTGGATCGCCTAAAGGTCATGATGCAG
Seq C2 exon
GTTCACGGTTCCAAATCAATGAACATATTTGGAGGCTTTCGGCAGATGGTAAAGGAAGGAGGAATCCGTTCTCTTTGGAGAGGAAATGGCATCAATGTCATTAAAATAGCTCCAGAGACAGCCGTTAAGTTCTGGGCGTATGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020470-'5-6,'5-5,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(27.3=47.4)
A:
PF0015322=Mito_carr=PU(35.9=62.3)
C2:
PF0015322=Mito_carr=FE(52.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGACTCTGACGGGACCATG
R:
ATACGCCCAGAACTTAACGGC
Band lengths:
252-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]