MmuEX0051273 @ mm9
Exon Skipping
Gene
ENSMUSG00000034116 | Vav1
Description
vav 1 oncogene [Source:MGI Symbol;Acc:MGI:98923]
Coordinates
chr17:57451207-57458165:+
Coord C1 exon
chr17:57451207-57451323
Coord A exon
chr17:57454667-57454754
Coord C2 exon
chr17:57458051-57458165
Length
88 bp
Sequences
Splice sites
3' ss Seq
ATCTTTCTCCCTCACTCCAGGTA
3' ss Score
11.02
5' ss Seq
CTGGTAAGG
5' ss Score
9.68
Exon sequences
Seq C1 exon
GTATGCGGGCCCTATGGAACGAGCAGGCGCTGAGGGCATCCTCACCAACCGTTCTGATGGGACCTATCTGGTGCGGCAGAGGGTGAAAGATACAGCGGAGTTCGCCATCAGCATTAA
Seq A exon
GTATAACGTGGAGGTCAAGCATATTAAAATCATGACGTCAGAGGGGTTGTACCGGATCACAGAGAAGAAGGCTTTCCGGGGCCTTCTG
Seq C2 exon
GAACTGGTAGAGTTTTATCAGCAGAATTCCCTCAAAGATTGCTTCAAGTCGTTGGACACCACCTTGCAGTTTCCTTATAAGGAACCTGAGAGGAGAGCCATCAGCAAGCCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034116-'24-27,'24-26,27-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=0.000 C2=0.026
Domain overlap (PFAM):
C1:
PF0001719=SH2=PU(52.0=97.5)
A:
PF0001719=SH2=FE(38.7=100)
C2:
PF0001719=SH2=PD(11.4=12.8)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACCAACCGTTCTGATGGG
R:
ATGGCTCTCCTCTCAGGTTCC
Band lengths:
178-266
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: