RnoEX6038498 @ rn6
Exon Skipping
Gene
ENSRNOG00000050430 | Vav1
Description
vav guanine nucleotide exchange factor 1 [Source:RGD Symbol;Acc:3951]
Coordinates
chr9:9623139-9628389:-
Coord C1 exon
chr9:9628273-9628389
Coord A exon
chr9:9625104-9625191
Coord C2 exon
chr9:9623139-9623253
Length
88 bp
Sequences
Splice sites
3' ss Seq
GTCTTTCTCCCTCGCTCCAGGTA
3' ss Score
11.42
5' ss Seq
CCGGTAAGG
5' ss Score
10.19
Exon sequences
Seq C1 exon
GTATGCGGGCCCCATGGAGCGAGCAGGCGCCGAGGGCATCCTCACCAACCGCTCTGATGGGACCTACCTGGTGCGGCAAAGGGTGAAAGATACAGCGGAATTCGCCATCAGCATTAA
Seq A exon
GTATAATGTGGAGGTCAAGCATATTAAAATCATGACGTCAGAGGGGTTGTACCGCATCACAGAGAAGAAGGCTTTCCGGGGCCTCCCG
Seq C2 exon
GAACTGGTAGAGTTTTATCAGCAGAATTCCCTAAAAGATTGCTTCAAGTCGTTGGACACCACCTTGCAGTTTCCTTACAAGGAACCTGAGAGGAGAGCCATCAACAAGCCGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050430-'28-28,'28-27,29-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=0.000 C2=0.026
Domain overlap (PFAM):
C1:
PF0001719=SH2=PU(52.0=97.5)
A:
PF0001719=SH2=FE(38.7=100)
C2:
PF0001719=SH2=PD(6.7=12.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCTCACCAACCGCTCTGAT
R:
ATGGCTCTCCTCTCAGGTTCC
Band lengths:
181-269
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]