MmuEX0052615 @ mm9
Exon Skipping
Gene
ENSMUSG00000079173 | Zan
Description
zonadhesin [Source:MGI Symbol;Acc:MGI:106656]
Coordinates
chr5:137835609-137837530:-
Coord C1 exon
chr5:137837313-137837530
Coord A exon
chr5:137836783-137836924
Coord C2 exon
chr5:137835609-137835826
Length
142 bp
Sequences
Splice sites
3' ss Seq
TCCTCCTGTGGCTTCTGTAGGCA
3' ss Score
8.74
5' ss Seq
TCAGTAAGG
5' ss Score
5.2
Exon sequences
Seq C1 exon
CTCTGCAGTGCCCAGCCCACAGCCATCACACCTACTGCCTACCCTCCTGCATCCCATCCTGCTCCAACGTGAATGACCGCTGTGAGAGCACCAGCCTCCAGAGGCCCTCTACCTGCATCGAAGGCTGCCTCTGCCACTCGGGCTTTGTGTTCAGTAAGGACAAGTGTGTGCCCAGAACTCAGTGTGGCTGCAAAGACTCCCAGGGTACCCTCATACCG
Seq A exon
GCAGGTAAGAACTGGATTACTACGGGCTGTTCCCAGAGATGTACCTGCACCGGGGGACTTGTTCAGTGCCACGACTTCCAGTGCCCCTCAGGAGCCGAGTGCCAGGACATCGAGGACGGCAACAGTAACTGTGTTGAAATCA
Seq C2 exon
CTGTGCAGTGCCCGGCCCACAGTCACTACTCCAAATGCCTTCCACCCTGTCAGCCTTCCTGCTCGGACCCTGATGGCCACTGTGAGGGCACCAGCCCCGAAGCCCCCTCCACCTGCGAGGAGGGCTGTGTCTGTGAACCTGACTATGTGCTGAGTAATGACAAGTGTGTGCCTAGCAGTGAGTGTGGCTGCAAAGACGCCCATGGCGTTCTCATCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079173_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=WD(100=80.8),PF127142=TILa=PU(17.9=13.7)
A:
PF127142=TILa=PD(78.6=91.7)
C2:
PF0182612=TIL=WD(100=80.8),PF127142=TILa=PU(17.9=13.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAACTCAGTGTGGCTGCAA
R:
TCTTTGCAGCCACACTCACTG
Band lengths:
242-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: