MmuEX0052615 @ mm10
Exon Skipping
Gene
ENSMUSG00000079173 | Zan
Description
zonadhesin [Source:MGI Symbol;Acc:MGI:106656]
Coordinates
chr5:137394381-137396302:-
Coord C1 exon
chr5:137396085-137396302
Coord A exon
chr5:137395555-137395696
Coord C2 exon
chr5:137394381-137394598
Length
142 bp
Sequences
Splice sites
3' ss Seq
TCCTCCTGTGGCTTCTGTAGGCA
3' ss Score
8.74
5' ss Seq
TCAGTAAGG
5' ss Score
5.2
Exon sequences
Seq C1 exon
CTCTGCAGTGCCCAGCCCACAGCCATCACACCTACTGCCTACCCTCCTGCATCCCATCCTGCTCCAACGTGAATGACCGCTGTGAGAGCACCAGCCTCCAGAGGCCCTCTACCTGCATCGAAGGCTGCCTCTGCCACTCGGGCTTTGTGTTCAGTAAGGACAAGTGTGTGCCCAGAACTCAGTGTGGCTGCAAAGACTCCCAGGGTACCCTCATACCG
Seq A exon
GCAGGTAAGAACTGGATTACTACGGGCTGTTCCCAGAGATGTACCTGCACCGGGGGACTTGTTCAGTGCCACGACTTCCAGTGCCCCTCAGGAGCCGAGTGCCAGGACATCGAGGACGGCAACAGTAACTGTGTTGAAATCA
Seq C2 exon
CTGTGCAGTGCCCGGCCCACAGTCACTACTCCAAATGCCTTCCACCCTGTCAGCCTTCCTGCTCGGACCCTGATGGCCACTGTGAGGGCACCAGCCCCGAAGCCCCCTCCACCTGCGAGGAGGGCTGTGTCTGTGAACCTGACTATGTGCTGAGTAATGACAAGTGTGTGCCTAGCAGTGAGTGTGGCTGCAAAGACGCCCATGGCGTTCTCATCCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000079173_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=WD(100=80.8),PF127142=TILa=PU(17.9=13.7)
A:
PF127142=TILa=PD(78.6=91.7)
C2:
PF0182612=TIL=WD(100=80.8),PF127142=TILa=PU(17.9=13.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAACTCAGTGTGGCTGCAA
R:
TCTTTGCAGCCACACTCACTG
Band lengths:
242-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types