Special

RnoEX0002489 @ rn6

Exon Skipping

Gene
ENSRNOG00000058123 | AABR07035780.2
Description
NA
Coordinates
chr12:22369716-22372040:+
Coord C1 exon
chr12:22369716-22369933
Coord A exon
chr12:22370331-22370472
Coord C2 exon
chr12:22371357-22372040
Length
142 bp
Sequences
Splice sites
3' ss Seq
TCCTCCTGTGGCTTCTGTAGGCA
3' ss Score
8.74
5' ss Seq
TCAGTAAGG
5' ss Score
5.2
Exon sequences
Seq C1 exon
TTCTGCAATGCCCAGCCCACAGCTACCACACCAACTGCCTTCCCTCCTGTATCCCATCCTGCTCCAACGTGAATGGCCGCTGTGAGTTTACCAGCCTCAAAAACCCCTCTACCTGCATAGAAGGCTGCCTCTGCCAGTCTGGCTTTGTGTTCAATAAGGACAAGTGTGTCCACAGAACTCAGTGTGGCTGCAAAGACTCCCAGGGCACCCTCATTCCG
Seq A exon
GCAGGTAAGAACTGGATTACCACGGGCTGTTCCCAGAGATGTACTTGCACGGCAGGACTTGTTCAGTGCCACGACTTCGAGTGCCCCTCAGGGACCGAGTGCCAGGACATCGAGGACGGCAACAGTAACTGTGCTGAAATCA
Seq C2 exon
CTGTGCAGTGCCCGGCCCACAGTCACTACTCCAAATGCCTTCCTTCATGCCTGCCTTCCTGCTCCGACCCAGATGGCCTCTGCAAGGGCACGCGCCCCAAAGCCTCCTCCACCTGTGAGGAGGGCTGTGTCTGTCAGTCCGGCTATGTGCTGAGTAACGACACGTGTATACGCAGCAGTGCGTGTACCTGCAAGAACACCCATGGTGTTCTCATCCCCGTGAGTGGGCATGGAGAGAGGGCTTGGTGAGGGCTAAAGGACATTGCTTCCTGGGTGAGGACCTCAGGTCAAGTCCCCGTAATCCACTTAAGCTAGGCGTGGTATTCTACATCTCTAATCCCAGAGCTCCTACTGAAATACAGGAGGTGCAAACAGGACCACCCTCAGGGACTTGCAGGCTAGACATTTGGTACATCATAGTGGTGAGCATCACGAGATCCAAGATGGGAGAGACGGGGGGACAGATAGACAAGAGACAGAACGAGAGACTGTTTCAGTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000058123_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

NonCoding

No structure available
Features
Disorder rate (Iupred):
  C1=NA A=NA C2=NA
Domain overlap (PFAM):

C1:
NA
A:
NA
C2:
NA


Main Inclusion Isoform:
NA


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
HIGH PSI
([1])
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
HIGH PSI
(ZAN)
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCTGCATAGAAGGCTGCCT
R:
ATAGCCGGACTGACAGACACA
Band lengths:
255-397
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]