MmuEX0053189 @ mm10
Exon Skipping
Gene
ENSMUSG00000038535 | Zfp280d
Description
zinc finger protein 280D [Source:MGI Symbol;Acc:MGI:2384583]
Coordinates
chr9:72301701-72308068:+
Coord C1 exon
chr9:72301701-72301766
Coord A exon
chr9:72301867-72302006
Coord C2 exon
chr9:72307951-72308068
Length
140 bp
Sequences
Splice sites
3' ss Seq
TGTGTAATTTTAAAATACAGGTT
3' ss Score
6.13
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
ATATTTTGAACAGAGTTAACCCCAGCTCTCATTCAAGAGGAATAAAGAATGGTATACTCAATCGAG
Seq A exon
GTTTTACTGCTTCATTCAAGCCTACAAGTCAACGCTGCCTGAATTCAGCATCAAATCCTGTGGCTGCCTTGCCAGTAAATTTTCATCCTGAATCTAGATCTTCAGATAGCTCTGTTATTGTTCAGCCATTTTCTAAACCT
Seq C2 exon
GGTTATGTAACAAATTCACCAAGAGTTCTGTCTAATAACTCTTCAGAGTTACTGTTTGACTTGACCCAGGATACAGGATTATCACATTACCAGGGGGGACCGACACTTTCTATTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038535_MULTIEX4-4/5=3-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.226 A=0.295 C2=0.271
Domain overlap (PFAM):
C1:
PF138361=DUF4195=FE(11.8=100)
A:
PF138361=DUF4195=FE(24.7=100)
C2:
PF138361=DUF4195=PD(21.3=83.3)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAACAGAGTTAACCCCAGCT
R:
TGCAATAGAAAGTGTCGGTCCC
Band lengths:
178-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types