HsaEX0073342 @ hg38
Exon Skipping
Gene
ENSG00000137871 | ZNF280D
Description
zinc finger protein 280D [Source:HGNC Symbol;Acc:HGNC:25953]
Coordinates
chr15:56693098-56704267:-
Coord C1 exon
chr15:56704121-56704267
Coord A exon
chr15:56700933-56701072
Coord C2 exon
chr15:56693098-56693215
Length
140 bp
Sequences
Splice sites
3' ss Seq
TGTGTTACTTTAAAATACAGGTA
3' ss Score
6.72
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
GTAATTCAAAAATGGCAGAACTGTTTATGGAATGTGAAGAAGAGGAGCTGGAACCATGGCAGAAGAAAGTAAAAGAAGTTGAGGATGACGATGATGATGAGCCAATCTTTGTTGGCGAGATATCAAGTTCAAAACCAGCAATTTCAA
Seq A exon
GTATTACTGCTGCATTCAAGCCTACAAGTCAACACTACACGAATCCAACATCAAATCCAGTGCCTGCCTCACCAATAAATTTTCATCCTGAGTCTAGATCTTCAGATAGTTCTGTTATTGTTCAGCCTTTTTCTAAACCT
Seq C2 exon
GGTTATATAACAAACTCATCACGAGTTGTGTCTAATAAGTCATCAGAGTTACTGTTTGACTTGACCCAGGATACAGGATTATCACATTACCAAGGGGGACCAACACTTTCTATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000137871_MULTIEX2-2/3=C1-3
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.705 A=0.874 C2=0.577
Domain overlap (PFAM):
C1:
PF138361=DUF4195=PU(12.5=28.0)
A:
PF138361=DUF4195=FE(24.7=100)
C2:
PF138361=DUF4195=FE(21.0=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCAGAACTGTTTATGGAATGTGA
R:
AGTGTTGGTCCCCCTTGGTAA
Band lengths:
242-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development