RnoEX0101217 @ rn6
Exon Skipping
Gene
ENSRNOG00000055631 | Zfp280d
Description
zinc finger protein 280D [Source:RGD Symbol;Acc:1560796]
Coordinates
chr8:78878949-78888937:+
Coord C1 exon
chr8:78878949-78879014
Coord A exon
chr8:78879110-78879249
Coord C2 exon
chr8:78888820-78888937
Length
140 bp
Sequences
Splice sites
3' ss Seq
TGTGTAATTTTAAAATACAGGTT
3' ss Score
6.13
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
Exon sequences
Seq C1 exon
ATATTTTGAACAGAGTTAACCCGAGCTCTCATTCAAGAGGAATAAAGAATGGTATACTTAATCGAG
Seq A exon
GTTTTACTGCTTCATTCAAGCCTACAAGTCAACGCTGCCCGAATTCAGCATCAAATCCTGTGGCTGCCTTGCCAGTAAATTTTCATCCTGAATCTAGATCTTCTGATAGCTCTGTTATTGTTCAGCCATTTTCTAAACCT
Seq C2 exon
GGTTATGTAACAAATTCACCACGAGTTCTATCTAGTAACCCTTCAGAGTTACTGTTTGACTTGACCCAGGATACAGGATTGTCACATTACCAAGGGGGACCAACACTTTCTATTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055631_MULTIEX3-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.522 A=0.691 C2=0.417
Domain overlap (PFAM):
C1:
PF138361=DUF4195=FE(11.8=100)
A:
PF138361=DUF4195=FE(24.7=100)
C2:
PF138361=DUF4195=FE(21.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGAACAGAGTTAACCCGAGCT
R:
TGCAATAGAAAGTGTTGGTCCCC
Band lengths:
178-318
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]