MmuEX0053343 @ mm10
Exon Skipping
Gene
ENSMUSG00000033961 | Zfp446
Description
zinc finger protein 446 [Source:MGI Symbol;Acc:MGI:2442185]
Coordinates
chr7:12979914-12983396:+
Coord C1 exon
chr7:12979914-12979979
Coord A exon
chr7:12981846-12981927
Coord C2 exon
chr7:12982119-12983396
Length
82 bp
Sequences
Splice sites
3' ss Seq
GACTGCTTGCATCCTTGCAGGAG
3' ss Score
8.32
5' ss Seq
AGGGTGAGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
GATTCCGAGGGACATCTTGAACATCAGGAAACGGTCTCCATATCCTTCCAAACAGGAAGGATCCAG
Seq A exon
GAGTGGGGCCTGTTGGACTCATCACAAAAAGAGCTGTGCTGGGGTGTGATGCCGGAGAAGTACGACACAGTGGTGTCCCAGG
Seq C2 exon
CAAGCCTGCCGCTGCTACAGCCAGAGACACATGTTGACTCTGAGCTGAGACCAAAACAGGAGATGCCACACGAAGGACCAGAATCCCTCCGGAGCCATCCCCCAGAAGTGGGAGCCATTGCAGATCCAAGGCTAGTTCAAGCCACTCCAAGTGAAAGGCAGAGCCCTTGCAAGGACCCTTCAGTCTTGTCTCCCACACCACTGCTTGAAGCCCCAGCGAGGCCCACACCTCGGAAGCTGTACGTTTGTGAGCAGTGTGGCCTCAGCTTTGACTGGAAGTCCGTTTTCATCATCCACCTCCGCACACACACGAGAGGGCCAGGCCTGGAGAGACCATCACAGGTGGCCCGGGAGCCGGCCATGAAGCGCTCCCCTGGCCTTCGGGGATACACATGCGTGGAGTGTGGGCGCAGCTTCAGCTGGAAGTCACAGCTGGTCATCCACCGCAAGAGCCATGCAGGCCAGCGGCGCCACTTCTGCCGCGACTGTGGCTGTAGCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033961-'9-13,'9-12,12-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.568 A=0.135 C2=0.451
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PU(25.6=45.5)
A:
PF0135222=KRAB=FE(71.1=100)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF0009621=zf-C2H2=WD(100=12.4),PF0009621=zf-C2H2=WD(100=12.4)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATCAGGAAACGGTCTCCA
R:
TAGCCTTGGATCTGCAATGGC
Band lengths:
181-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types