MmuEX0053389 @ mm9
Exon Skipping
Gene
ENSMUSG00000025470 | Zfp511
Description
zinc finger protein 511 [Source:MGI Symbol;Acc:MGI:1917002]
Coordinates
chr7:147222719-147223320:+
Coord C1 exon
chr7:147222719-147222792
Coord A exon
chr7:147223017-147223033
Coord C2 exon
chr7:147223119-147223320
Length
17 bp
Sequences
Splice sites
3' ss Seq
AAGCGCTCTTCTTGTTTCAGGCT
3' ss Score
7.59
5' ss Seq
TGGGTAAGA
5' ss Score
8.91
Exon sequences
Seq C1 exon
GATGGGGATGTGCAGCGGCACCTGTACTTGCAGGACATGCTCACGCAAGTGTCCGAGACGCCGGAAAAATCCAT
Seq A exon
GCTCAGCTGGAATATGG
Seq C2 exon
GGTGCCTGAGTTCACCTGTCAGGTGGCTGGCTGTTGCCAAGTGTTTGCCGCCATAGAAGACTACCAGCACCACTACCACATGATGCATGGAAACACCTGCTCCTTCTGCAACCGTGCCTTCCCCTCTGGGCATTTGCTGGATGTCCACATCCTGGAATGGCACGACTCTCTGTTTCAGATCCTGGCCCAGAGGCAAGACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025470-'2-4,'2-3,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
Show structural model
Features
Disorder rate (Iupred):
C1=0.013 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF072556=Benyvirus_14KDa=PU(34.1=60.0)
A:
NO
C2:
PF0009621=zf-C2H2=WD(100=33.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGACGCCGGAAAAATCCAT
R:
TGCATCATGTGGTAGTGGTGC
Band lengths:
108-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types