MmuEX0053390 @ mm9
Exon Skipping
Gene
ENSMUSG00000025470 | Zfp511
Description
zinc finger protein 511 [Source:MGI Symbol;Acc:MGI:1917002]
Coordinates
chr7:147222290-147223320:+
Coord C1 exon
chr7:147222290-147222505
Coord A exon
chr7:147222719-147222792
Coord C2 exon
chr7:147223119-147223320
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTGACGCGTGTCTTCTGTAGGAT
3' ss Score
10.01
5' ss Seq
CATGTGAGC
5' ss Score
5.03
Exon sequences
Seq C1 exon
AGTAGACGTCACGTCCGTCACCACCCCTCCGACGGTGGCCGAAGGGCCGCGGCGGCCGTGGTGATGTTGCTTCCCCCTGCACTATATTCCCGCCTGGCCGGGGAGCCGGGGGCAGCCGAACCGCTGCCCGTGGAGAGGAACCCTGCGGCTGGGGAGGCACCCTTCCGATTCGCGCCGCGTGCCGTGCGCTTCCCGCGGGATCACGAATTCTTCGAG
Seq A exon
GATGGGGATGTGCAGCGGCACCTGTACTTGCAGGACATGCTCACGCAAGTGTCCGAGACGCCGGAAAAATCCAT
Seq C2 exon
GGTGCCTGAGTTCACCTGTCAGGTGGCTGGCTGTTGCCAAGTGTTTGCCGCCATAGAAGACTACCAGCACCACTACCACATGATGCATGGAAACACCTGCTCCTTCTGCAACCGTGCCTTCCCCTCTGGGCATTTGCTGGATGTCCACATCCTGGAATGGCACGACTCTCTGTTTCAGATCCTGGCCCAGAGGCAAGACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025470_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.215 A=0.013 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF072556=Benyvirus_14KDa=PU(34.1=60.0)
C2:
PF0009621=zf-C2H2=WD(100=33.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCCCCTGCACTATATTCCCG
R:
CTGACAGGTGAACTCAGGCAC
Band lengths:
167-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: