HsaEX6091298 @ hg19
Exon Skipping
Gene
ENSG00000198546 | ZNF511
Description
zinc finger protein 511 [Source:HGNC Symbol;Acc:28445]
Coordinates
chr10:135121979-135123481:+
Coord C1 exon
chr10:135121979-135122600
Coord A exon
chr10:135122894-135122967
Coord C2 exon
chr10:135123280-135123481
Length
74 bp
Sequences
Splice sites
3' ss Seq
ACGGCGCACTTTTCCTGCAGGAT
3' ss Score
10.46
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GCTCCGCCCCGCCCCGGCTGAGTGTCGGGCCGCGGGGCAAGACGCTGGCCTGGCCGGTGCAGGCCCGAAGGGCTTCGGCCCCAGAGTTCGGGGACCGCTGCACAGCCAGAGGGAGCGCGCGGGAAGAGCCGCGTCCCGCCAGCCCCGTCGCCTCGTGGGCCCCCCCGGGCCTGGCAGTCCCCCAACCCCCTCATCACGCCCGCGCCCGCGTTCGGCCAGGACTCACCGCAGTCCCGGAGCCACAGCCCCCGCGCAGCCCCCGACGGCGGCGGAAGTGAGCGTGACGTCACGTCCGGCTCGGCTCGCGGACGGTGGCCGACAGGCTGCGCCCGCCCGCGCCCGGGGTGATGCAGTTGCCCCCCGCGCTGTGCGCCCGCCTCGCTGCGGGGCCCGGGGCGGCGGAGCCGCTGCCTGTAGAGCGGGATCCCGCGGCTGGGGCCGCGCCCTTTCGCTTCGTTGCGCGCCCCGTGCGCTTCCCGCGGGAGCACCAGTTCTTCGAG
Seq A exon
GATGGGGACGTGCAGCGCCACCTCTACCTCCAGGACGTGATCATGCAGGTGGCCGACGTGCCTGAGAAGCCCAG
Seq C2 exon
GGTGCCCGCGTTTGCCTGCCAGGTGGCCGGCTGCTGCCAGGTGTTCGATGCCCTGGACGACTACGAGCACCACTACCACACGCTGCACGGAAATGTTTGCTCCTTTTGCAAGCGGGCCTTCCCTTCCGGACACCTGCTGGACGCCCACATCCTGGAGTGGCACGATTCGCTCTTCCAGATCCTGTCTGAGAGGCAGGACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198546-'0-2,'0-0,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.098 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009621=zf-C2H2=WD(100=33.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCTGTAGAGCGGGATCC
R:
TGTGGTAGTGGTGCTCGTAGT
Band lengths:
173-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)