RnoEX0101444 @ rn6
Exon Skipping
Gene
ENSRNOG00000018272 | Zfp511
Description
zinc finger protein 511 [Source:RGD Symbol;Acc:1308585]
Coordinates
chr1:212359177-212360345:+
Coord C1 exon
chr1:212359177-212359525
Coord A exon
chr1:212359776-212359816
Coord C2 exon
chr1:212360144-212360345
Length
41 bp
Sequences
Splice sites
3' ss Seq
AGCGGCACCTGTACTTGCAGGAC
3' ss Score
6.2
5' ss Seq
CATGTGAGC
5' ss Score
5.03
Exon sequences
Seq C1 exon
CTGGCTCGCGTTCCGGATCCCGCGCCCGGCTCCAGCCCCGCCCTTCTCCGACCGGTTCCCGCCACAACATAGACCCAGCCCTGACTCACCTCCGCGCGTCGCGTCCCGCCCCGCAGGGTCGCCACAGGAAGTTAATAGACGTCACGTCCGTCACCACCCCTCCGACGGTGGCCGAAGGGCTGCGGCGGCCGTAGTGATGTTGCTTCCCCCTGCACTATATTCCCGCCTGGCCGGCGAGCCCGGGGCAGCTGAACCGCTGCCCGTGGAGCGCAACCCTGCGGCTGGGGAGGCACCCTTCCGATATGCGCCGCGTCCCGTGCGCTTCCCGCGGGATCACGAATTCTTCGAG
Seq A exon
GACATGCTCACGCAAGTGTCCGAGACGCCGGAAAAATCCAT
Seq C2 exon
GGTGCCCGAGTTCACCTGTCAGGTGGCTGGCTGTTGCCAAGTGTTTGCCGCCATAGAAGACTACCAACACCACTACCACATGATGCATGGAAATACCTGCTCCTTCTGCAACCGCGCCTTCCCCTCTGGGCATTTGCTGGATGTCCACATCCTGGAATGGCACGATTCTCTATTTCAGATCCTGGCCCAGAGGCAAGACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018272-'0-2,'0-1,1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.216 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCGGGATCACGAATTCTTC
R:
GGTTGCAGAAGGAGCAGGTAT
Band lengths:
137-178
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]