BtaEX6100696 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000012416 | ZNF511
Description
Bos taurus zinc finger protein 511 (ZNF511), mRNA. [Source:RefSeq mRNA;Acc:NM_001206234]
Coordinates
chr26:25940666-25941636:-
Coord C1 exon
chr26:25941484-25941636
Coord A exon
chr26:25941158-25941231
Coord C2 exon
chr26:25940666-25940867
Length
74 bp
Sequences
Splice sites
3' ss Seq
CGCAGAGCTGTCTTCCGCAGGAC
3' ss Score
6.25
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATGCAGTTGCCGCCCGCGCTGCACGCCCGCCTGGCGGGGGCCCCTGGGGCGGCCGCGCCGCTGCCCGTGCAGCGGGACTCCCTGGCCGGGAACGCGCCCTTCCGCTTCGCGGCGCGCCAGGTGCGCTTCCCGCGGGAACACGAGTTCTTCGAG
Seq A exon
GACGGAGACGTGCAGAGGCACCTCTACCTCCAGGATGTGATTACGCAGGTGGCTGCGGAGCCGGAGAGGCCCAG
Seq C2 exon
GGTGCCTGAGTTCACCTGTCAGGTGGCCGGCTGCTGCCAGGCGTTTGACACTCTGGAGGACTATGAGCATCACTACCACACTCTGCACGGAAACGTCTGCTCCTCCTGCAAGCGGGCCTTCCCCTCTGGTCACCTGCTGGACACCCACATCCAGGAGTGGCACGACTCACTGTTCCAGATCCTGGCTGAACGGCAGGACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012416-'1-2,'1-0,2-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.039 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGCGGGACTCCCTG
R:
TTCCGTGCAGAGTGTGGTAGT
Band lengths:
179-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]