GgaEX1065511 @ galGal4
Exon Skipping
Gene
ENSGALG00000003533 | ZNF511
Description
zinc finger protein 511 [Source:HGNC Symbol;Acc:HGNC:28445]
Coordinates
chr6:8904186-8904975:+
Coord C1 exon
chr6:8904186-8904329
Coord A exon
chr6:8904416-8904489
Coord C2 exon
chr6:8904774-8904975
Length
74 bp
Sequences
Splice sites
3' ss Seq
TCCGTGTCCCCCCGCTGCAGGAT
3' ss Score
9.82
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
ATGCTGCTGTCCGCCCTCCGCCACCGCTTGCGGGAGCGCCCGCCGCTGCCTCCCGTCCCGCCGCCCGCCTCGGCCCCGCCGCGGCCGCCCTTCGCTTTCTCCCCGCGCCGCCTGCGCCTGGGCCCGCAGCACCCGCTGCTCGAG
Seq A exon
GATGGCGACGTGCAGAGGCACCTGTACCTGCGGGAGGCCCTCACGGGCCGCGCCGAGGAGGCGGAGAGGCCCAG
Seq C2 exon
GGTGTCTGAGTTTTACTGCCACATCTCCGGCTGCTCTCAGGTGTTCGACACGCTGGAGGGCTACGAGCACCACTACAACGCGCTGCACCGGAACGTCTGCTCCTTCTGCAGGCGCTCCTTCCCCTCGGGGCACCTTCTGGACATCCACATCTCCGAGTGGCACGACTCGCTCTTCCAGATCATGGCTGAGAAGCAGAATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003533-'0-2,'0-0,1-2
Average complexity
S
Mappability confidence:
83%=100=80%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.479 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0009621=zf-C2H2=WD(100=33.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCCCTTCGCTTTCTCCC
R:
GCAGAAGGAGCAGACGTTCC
Band lengths:
168-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]