MmuINT0179352 @ mm9
Intron Retention
Gene
ENSMUSG00000025470 | Zfp511
Description
zinc finger protein 511 [Source:MGI Symbol;Acc:MGI:1917002]
Coordinates
chr7:147222719-147223320:+
Coord C1 exon
chr7:147222719-147222792
Coord A exon
chr7:147222793-147223118
Coord C2 exon
chr7:147223119-147223320
Length
326 bp
Sequences
Splice sites
5' ss Seq
CATGTGAGC
5' ss Score
5.03
3' ss Seq
AGACACACCTCCTTTCCCAGGGT
3' ss Score
4.93
Exon sequences
Seq C1 exon
GATGGGGATGTGCAGCGGCACCTGTACTTGCAGGACATGCTCACGCAAGTGTCCGAGACGCCGGAAAAATCCAT
Seq A exon
GTGAGCACCTTGGCTTCGAGGCCTTACTCGGCTTGCTAGCGCTATCCTGATTCCTCCTCTCTCGTCCGCTTACACCCTGGGACTCCGACCCCTCCCAGTTGACACCCGAGTAGCATCCACTTAGCACCACCCTGCCCTAACAGGAGCATGGCTTGGCTGGACTTCCCTCCCCTAGTCTGTTAGTAAGGTTTGGGGTGGCACAAGAAGCGCTCTTCTTGTTTCAGGCTCAGCTGGAATATGGGTAAGAAGTTCCGCCGGAATTCCTGCCTTGGGATAGTTGGGGGAAGGGGGAAACATTCTTCCAAGAGACACACCTCCTTTCCCAG
Seq C2 exon
GGTGCCTGAGTTCACCTGTCAGGTGGCTGGCTGTTGCCAAGTGTTTGCCGCCATAGAAGACTACCAGCACCACTACCACATGATGCATGGAAACACCTGCTCCTTCTGCAACCGTGCCTTCCCCTCTGGGCATTTGCTGGATGTCCACATCCTGGAATGGCACGACTCTCTGTTTCAGATCCTGGCCCAGAGGCAAGACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025470-Zfp511:NM_027201:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.013 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF072556=Benyvirus_14KDa=PU(34.1=60.0)
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=33.8)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGGGATGTGCAGCGG
R:
TGGGCCAGGATCTGAAACAGA
Band lengths:
263-589
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: