GgaINT0040848 @ galGal3
Intron Retention
Gene
ENSGALG00000003533 | ZNF511
Description
NA
Coordinates
chr6:10487792-10488559:+
Coord C1 exon
chr6:10487792-10487866
Coord A exon
chr6:10487867-10488434
Coord C2 exon
chr6:10488435-10488559
Length
568 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TCTTCTTTCCTTTCTTTCAGTAC
3' ss Score
11.69
Exon sequences
Seq C1 exon
GGATGGCGACGTGCAGAGGCACCTGTACCTGCGGGAGGCCCTCACGGGCCGCGCCGAGGAGGCGGAGAGGCCCAG
Seq A exon
GTGAGCCGCGTGGAAGGAGAGCTCAGCCCCGCGGAGCCCCTGCCCGGCCTCTGGAGCTTCTCGGGCGGGGAGCGGCGGGTGGGCCGCCGCTGGGTACTCACAGGGACTCGAACCTTCCGTCAGAGAGCTGTGTGCAGACACTCCTGAGCTCTGGCAGCTCGGGGCCGTGACCCTGGGCAGCCTGTGCCGTGCCCACCGCCTTTGGGGCAGAGCCTTTTAATGAGGCTTGTACGTACATTCACTTGCATGCTGAGGATGCCGTAACACGCTGTCCTTCCGTACAGGGTGTCTGAGTTTTACTGCCACATCTCCGGCTGCTCTCAGGTGTTCGACACGCTGGAGGGCTACGAGCACCACTACAACGCGCTGCACCGGAACGTCTGCTCCTTCTGCAGGCGCTCCTTCCCCTCGGGGCACCTTCTGGACATCCACATCTCCGAGTGGCACGACTCGCTCTTCCAGATCATGGCTGAGAAGCAGAATATGGTGAGGGCACGGCTGGGCCCCTGCTGCCACACAGACTGGCCGTTCGCCCTTCCCAAGGGGTGTCTTCTTTCCTTTCTTTCAG
Seq C2 exon
TACAAGTGCTTGGTAGAAGGCTGTGTGGAGAAGTTCAAGAGCAGCAAAGACAGGAAGGATCACTTGGTCACTGTTCACTTATACCCTGCTGACTTCCGATTCGATAGACCAAAGAAAGCGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003533:ENSGALT00000005587:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.920 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGCACCTGTACCTGCG
R:
TCGCTTTCTTTGGTCTATCGA
Band lengths:
182-750
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]