HsaINT0187453 @ hg19
Intron Retention
Gene
ENSG00000198546 | ZNF511
Description
zinc finger protein 511 [Source:HGNC Symbol;Acc:28445]
Coordinates
chr10:135123280-135123792:+
Coord C1 exon
chr10:135123280-135123481
Coord A exon
chr10:135123482-135123667
Coord C2 exon
chr10:135123668-135123792
Length
186 bp
Sequences
Splice sites
5' ss Seq
ATGGTGGGT
5' ss Score
6.18
3' ss Seq
TGACACGGTCTCCATTTCAGTAT
3' ss Score
8.01
Exon sequences
Seq C1 exon
GGTGCCCGCGTTTGCCTGCCAGGTGGCCGGCTGCTGCCAGGTGTTCGATGCCCTGGACGACTACGAGCACCACTACCACACGCTGCACGGAAATGTTTGCTCCTTTTGCAAGCGGGCCTTCCCTTCCGGACACCTGCTGGACGCCCACATCCTGGAGTGGCACGATTCGCTCTTCCAGATCCTGTCTGAGAGGCAGGACATG
Seq A exon
GTGGGTGACAACTGCACAGCCGCCGAGGCCACCCCCCATTGGTGATGGGCTCAGAGTGCTGCCCCCAGCTCTCGGGTGCTCGGGCAAGGCCGGGGACACCTTTCCGCCCTTGGCAGCTCTGCTACGGGGGCATGGCGGTGGGGGAGGGCCAGGGGTCAGAGGGAGGTGACACGGTCTCCATTTCAG
Seq C2 exon
TATCAGTGCTTGGTAGAAGGCTGCACAGAGAAGTTCAAGACCAGCAGAGACCGGAAGGATCACATGGTGAGGATGCACCTGTACCCCGCGGACTTCCGGTTTGATAAGCCAAAGAAAAGCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198546-ZNF511:NM_145806:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.095
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=WD(100=33.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACGAGCACCACTACCACA
R:
TGGCTTATCAAACCGGAAGTCC
Band lengths:
254-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)