GgaINT0040848 @ galGal4
Intron Retention
Gene
ENSGALG00000003533 | ZNF511
Description
zinc finger protein 511 [Source:HGNC Symbol;Acc:HGNC:28445]
Coordinates
chr6:8904774-8905182:+
Coord C1 exon
chr6:8904774-8904975
Coord A exon
chr6:8904976-8905057
Coord C2 exon
chr6:8905058-8905182
Length
82 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
3' ss Seq
TCTTCTTTCCTTTCTTTCAGTAC
3' ss Score
11.69
Exon sequences
Seq C1 exon
GGTGTCTGAGTTTTACTGCCACATCTCCGGCTGCTCTCAGGTGTTCGACACGCTGGAGGGCTACGAGCACCACTACAACGCGCTGCACCGGAACGTCTGCTCCTTCTGCAGGCGCTCCTTCCCCTCGGGGCACCTTCTGGACATCCACATCTCCGAGTGGCACGACTCGCTCTTCCAGATCATGGCTGAGAAGCAGAATATG
Seq A exon
GTGAGGGCACGGCTGGGCCCCTGCTGCCACACAGACTGGCCGTTCGCCCTTCCCAAGGGGTGTCTTCTTTCCTTTCTTTCAG
Seq C2 exon
TACAAGTGCTTGGTAGAAGGCTGTGTGGAGAAGTTCAAGAGCAGCAAAGACAGGAAGGATCACTTGGTCACTGTTCACTTATACCCTGCTGACTTCCGATTCGATAGACCAAAGAAAGCGAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003533:ENSGALT00000005587:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=WD(100=33.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACGAGCACCACTACAACGC
R:
CCACACAGCCTTCTACCAAGC
Band lengths:
170-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]