RnoINT0168301 @ rn6
Intron Retention
Gene
ENSRNOG00000018272 | Zfp511
Description
zinc finger protein 511 [Source:RGD Symbol;Acc:1308585]
Coordinates
chr1:212360144-212360556:+
Coord C1 exon
chr1:212360144-212360345
Coord A exon
chr1:212360346-212360431
Coord C2 exon
chr1:212360432-212360556
Length
86 bp
Sequences
Splice sites
5' ss Seq
ATGGTGGGT
5' ss Score
6.18
3' ss Seq
TGACACCTTATTCTTTGTAGTAC
3' ss Score
5.02
Exon sequences
Seq C1 exon
GGTGCCCGAGTTCACCTGTCAGGTGGCTGGCTGTTGCCAAGTGTTTGCCGCCATAGAAGACTACCAACACCACTACCACATGATGCATGGAAATACCTGCTCCTTCTGCAACCGCGCCTTCCCCTCTGGGCATTTGCTGGATGTCCACATCCTGGAATGGCACGATTCTCTATTTCAGATCCTGGCCCAGAGGCAAGACATG
Seq A exon
GTGGGTGTTGACTACACTGGGCAGTTGTGACTGGGATCAGGGCTTAGGGCAGGATGAGAGTGGAGGTGACACCTTATTCTTTGTAG
Seq C2 exon
TACCAGTGCTTGGTTGAAAGCTGCCCAGAGAAGTTCAAGACCAGCCAAGACCGGAAGGATCACATGGTGAGGCTACACCTGTACCCTGCGGATTTCCGGTTTGATAAGCCCAAGACAAACAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018272:ENSRNOT00000046314:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.095
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGGGCATTTGCTGGATGT
R:
ATCCGCAGGGTACAGGTGTAG
Band lengths:
172-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]