MmuINT0179353 @ mm9
Intron Retention
Gene
ENSMUSG00000025470 | Zfp511
Description
zinc finger protein 511 [Source:MGI Symbol;Acc:MGI:1917002]
Coordinates
chr7:147223119-147223539:+
Coord C1 exon
chr7:147223119-147223320
Coord A exon
chr7:147223321-147223414
Coord C2 exon
chr7:147223415-147223539
Length
94 bp
Sequences
Splice sites
5' ss Seq
ATGGTGGGT
5' ss Score
6.18
3' ss Seq
TGACACTTTATTCTTTGTAGTAC
3' ss Score
5.57
Exon sequences
Seq C1 exon
GGTGCCTGAGTTCACCTGTCAGGTGGCTGGCTGTTGCCAAGTGTTTGCCGCCATAGAAGACTACCAGCACCACTACCACATGATGCATGGAAACACCTGCTCCTTCTGCAACCGTGCCTTCCCCTCTGGGCATTTGCTGGATGTCCACATCCTGGAATGGCACGACTCTCTGTTTCAGATCCTGGCCCAGAGGCAAGACATG
Seq A exon
GTGGGTGCTGACTGCACTGGGTGCATCTGCAGTGGTGACTGGGATTAGGGCTTAGGGCAGGGTGAGAGTAGAGGTGACACTTTATTCTTTGTAG
Seq C2 exon
TACCAGTGCTTGGTTGAAAGCTGCCCAGAGAAGTTCAAGACCAGCCAAGACCGGAAGGATCACATGGTGAGGCTACACCTGTACCCTGCGGATTTCCGATTTGATAAGCCCAAGACGAACAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025470-Zfp511:NM_027201:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.190
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=WD(100=33.8)
A:
NA
C2:
PF072556=Benyvirus_14KDa=PD(61.4=64.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACACCTGCTCCTTCTGCAAC
R:
ACCATGTGATCCTTCCGGTCT
Band lengths:
179-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: