BtaINT0165610 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012416 | ZNF511
Description
Bos taurus zinc finger protein 511 (ZNF511), mRNA. [Source:RefSeq mRNA;Acc:NM_001206234]
Coordinates
chr26:25940395-25940867:-
Coord C1 exon
chr26:25940666-25940867
Coord A exon
chr26:25940520-25940665
Coord C2 exon
chr26:25940395-25940519
Length
146 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
3' ss Seq
TGACACTGTTTCTGCTGTAGTAC
3' ss Score
6.72
Exon sequences
Seq C1 exon
GGTGCCTGAGTTCACCTGTCAGGTGGCCGGCTGCTGCCAGGCGTTTGACACTCTGGAGGACTATGAGCATCACTACCACACTCTGCACGGAAACGTCTGCTCCTCCTGCAAGCGGGCCTTCCCCTCTGGTCACCTGCTGGACACCCACATCCAGGAGTGGCACGACTCACTGTTCCAGATCCTGGCTGAACGGCAGGACATG
Seq A exon
GTGAGGGATGCTCGCCCACTGAGGCCAAGGGCAGTCATCACAGGGCTTGTCCCGGAGCCGTGTGCCTCATGGTGCTGGAGCCTGGGGTCCAGACTGGGCGAGGCAGTGGTCCCGGGGTCAGGGTGGTGACACTGTTTCTGCTGTAG
Seq C2 exon
TACCAGTGCCTGGTGGAGGGCTGCACGGAGAAGTTCAGGACCAGCAGAGACCGGAAGGAGCACCTGGTAACTCATCACCTCTACCCTGCAGATTTCCGCTTTGATAAACCGAGGAAGGGCAGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012416:ENSBTAT00000016475:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.167
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCTGAGTTCACCTGTCAG
R:
GTCCTGAACTTCTCCGTGCAG
Band lengths:
242-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]