DreINT0181450 @ danRer10
Intron Retention
Gene
ENSDARG00000000760 | znf511
Description
zinc finger protein 511 [Source:ZFIN;Acc:ZDB-GENE-030616-621]
Coordinates
chr13:24535411-24537288:-
Coord C1 exon
chr13:24537087-24537288
Coord A exon
chr13:24535536-24537086
Coord C2 exon
chr13:24535411-24535535
Length
1551 bp
Sequences
Splice sites
5' ss Seq
ATGGTAATC
5' ss Score
4.14
3' ss Seq
TTACTAATATTGCTTTTCAGTAT
3' ss Score
8.14
Exon sequences
Seq C1 exon
TATCTCTGAGTTCAGGTGTCACATTGCAGGATGCAAACAATTATTCGACACACTGGAAGGATATGAGCACCACTACAATGCATTACATCGAAACGTGTGCTCCAACTGTAAGCGATCGTTTCCATCAAATCGCCTGCTGGAGATCCACATATTGGAGTGGCATGACTCTCTCTTCCAGATCATGGCGGAGAAACAATGCATG
Seq A exon
GTAATCTCATTTTCAATACCATTTTGGAGTGTAGAGAGTGATATATAAAGTGTTGTGGCCAATAATGATAGCATTGTGTGAATGTGTGGTAGATGTAGATTTATACTTTAGTCAACATTTGAAGTGTATCAAAAAAGTTAATCAAAATGGTCCCAAGCCAAGAATGGGTGTTGTTTAATAGTTTTAGGACATTTTTAAAGCCAGATTGGAGTGCAGTGAGTGATATCACCCTTTGAATTGTTTTTCTTTTTTTAATATTTCCCAAACGATGTTTAACAGAGCATGGAAATTTTCTGTTTGTCTGATAACATTTTTTCTTCTGGAGAAAGTCTTATTTGTTTTATTTAGGCTACAATAAATTGTATTAAATTTTTTTAAGAACCATTTTAAGTTCAAAATTATCAACCCGTTTTAAGATATCTGGTTTTTCGATAGTCTACAGAACAAACCATTGTTATACAATGACTTGCCTAATTACCCTAACCTGCCTAGTTAAACTAATTAACCCAGTTAAGCATTTAAATGTCACTTTAAGCAATATAGAAGTTTCTTGAAAAATGTCTAGTAAAATATTATTTACTGTCATCATGGCAAAGATAAAATAAATCAGTTATTAGAAATGAGTAATTAAAACTATTATGTTTGATAGGGTGGGAAGGGGGAATTATTCAGTGGGGCTAATAGTTCTGACTCAACTGTATTATATATATATTGTGGCCACGTGATTCATTATAGAATCGTGTGAATTGTGGATAAATCATTTGAAGTATATAAAAAAATGATCAAAATTGTCAAGCTAAAAATGGGTGTTGTTGTTTTTAGGACATTAGCAAAACCTCTAAATAAGTCAATAGTTTTAGGACCACTTTGATAAAAGTTTTTGATCCAGTGTATATGTTGACTACTGTTAACTGTTATAGATATATAAATTGACCACAGATTGATAAAACAAATATATTAGAGAGAATTCTTATATGAATTATTTGTGTAAATGCCTACCAGATTAGAAAAACTGTAAAAACATTTACTCACAGAAGTAAGCTTCACATTTAACTAGATCCAAGAGAAATGCTGCCATCTACTGGTTTCATCCGCAAGTTGTAGTAGGAATAGTTCTAACACAAAAATGACAGTTCTGTCATCTTTGACTATTTTCTGTTAAACGCCCAAAAATACACGTTTTATTTTTATTATAATATTTTTTATAATGCTAGCCATTGACTTTCATTGTATATTTTCCTATGATGGATGTCAGACAGTGGCTATGGGTTACCGAAATTCTTCAAAATATATTCTTTGTATACAGCAGAAAAAAATTTAAATACAATTTTGGAACAGTTTGGTTGAGGAAATACTGATTCATTTTGGCGCTTAAAACGTTGAAACTCATTTTAAAAGAAGCAAAAATAAGTGAAATTAAATATTAGTACATATATCATTATATATCTTCCCTACTCTCGATACGCCATTTAAACCAGCAAATATATTTTTTTCTCTGCTTTTTCTCTGATAAACATCTGTTAATTCTGTTTTACTAATATTGCTTTTCAG
Seq C2 exon
TATGAGTGCTTGGTTGAAGGATGTGGACTGAAATTCAAAACGAGCAAAGAAAGGAAAGATCATCTAATCAGAACGCATAGCTATCCAGCGGACTTCAGATTTGACAAGTCAAAGAAGATCGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000000760:ENSDART00000000831:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.095
Domain overlap (PFAM):
C1:
PF0009621=zf-C2H2=WD(100=33.8),PF138941=zf-C2H2_4=PU(6.9=2.9)
A:
NA
C2:
PF138941=zf-C2H2_4=PD(86.2=59.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTCTGAGTTCAGGTGTCACA
R:
CTTCCGATCTTCTTTGACTTGTCA
Band lengths:
326-1877
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]