GgaINT1031448 @ galGal4
Intron Retention
Gene
NA
Description
NA
Coordinates
chr6:8904416-8904975:+
Coord C1 exon
chr6:8904416-8904489
Coord A exon
chr6:8904490-8904773
Coord C2 exon
chr6:8904774-8904975
Length
284 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CACGCTGTCCTTCCGTACAGGGT
3' ss Score
9.88
Exon sequences
Seq C1 exon
GATGGCGACGTGCAGAGGCACCTGTACCTGCGGGAGGCCCTCACGGGCCGCGCCGAGGAGGCGGAGAGGCCCAG
Seq A exon
GTGAGCCGCGTGGAAGGAGAGCTCAGCCCCGCGGAGCCCCTGCCCGGCCTCTGGAGCTTCTCGGGCGGGGAGCGGCGGGTGGGCCGCCGCTGGGTACTCACAGGGACTCGAACCTTCCGTCAGAGAGCTGTGTGCAGACACTCCTGAGCTCTGGCAGCTCGGGGCCGTGACCCTGGGCAGCCTGTGCCGTGCCCACCGCCTTTGGGGCAGAGCCTTTTAATGAGGCTTGTACGTACATTCACTTGCATGCTGAGGATGCCGTAACACGCTGTCCTTCCGTACAG
Seq C2 exon
GGTGTCTGAGTTTTACTGCCACATCTCCGGCTGCTCTCAGGTGTTCGACACGCTGGAGGGCTACGAGCACCACTACAACGCGCTGCACCGGAACGTCTGCTCCTTCTGCAGGCGCTCCTTCCCCTCGGGGCACCTTCTGGACATCCACATCTCCGAGTGGCACGACTCGCTCTTCCAGATCATGGCTGAGAAGCAGAATATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003533:ENSGALT00000005587:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGGCACCTGTACCTG
R:
TCTGCTTCTCAGCCATGATCTG
Band lengths:
260-544
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]