HsaINT0187452 @ hg19
Intron Retention
Gene
ENSG00000198546 | ZNF511
Description
zinc finger protein 511 [Source:HGNC Symbol;Acc:28445]
Coordinates
chr10:135122894-135123481:+
Coord C1 exon
chr10:135122894-135122967
Coord A exon
chr10:135122968-135123279
Coord C2 exon
chr10:135123280-135123481
Length
312 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
GAAGCACGTCTCCTTGGCAGGGT
3' ss Score
3.52
Exon sequences
Seq C1 exon
GATGGGGACGTGCAGCGCCACCTCTACCTCCAGGACGTGATCATGCAGGTGGCCGACGTGCCTGAGAAGCCCAG
Seq A exon
GTAAGCGAATGGGCAGTGCCTAGCCAGTGCTACTCCTGCGCCGCCTCCCTGACCGGTGCCTGGTCCCTGGGGCTGTGCTGCCGCTCTTCCATGTGCGGCCGCCCCACCGAGGCGCTGTGCCTGTCCAGCTTTGGCGTGGCCGACTCTTCCACCACCTAGCCTGTTTGTGAAACTTAATTCATAAAAAGAGGGTTTGGGATTGCAAAAGATGCATAGGGGCTTTATTGGACGTCTCAAAGGGAAACTGTGCAGAAAGTCCAGCTTGGTTCCTCGCACCGGAGGAAGGGCTCCTGAAGCACGTCTCCTTGGCAG
Seq C2 exon
GGTGCCCGCGTTTGCCTGCCAGGTGGCCGGCTGCTGCCAGGTGTTCGATGCCCTGGACGACTACGAGCACCACTACCACACGCTGCACGGAAATGTTTGCTCCTTTTGCAAGCGGGCCTTCCCTTCCGGACACCTGCTGGACGCCCACATCCTGGAGTGGCACGATTCGCTCTTCCAGATCCTGTCTGAGAGGCAGGACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198546-ZNF511:NM_145806:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0009621=zf-C2H2=WD(100=33.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGCGCCACCTCTAC
R:
GTCCTGCCTCTCAGACAGGAT
Band lengths:
264-576
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)