BtaINT0165609 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012416 | ZNF511
Description
Bos taurus zinc finger protein 511 (ZNF511), mRNA. [Source:RefSeq mRNA;Acc:NM_001206234]
Coordinates
chr26:25940666-25941231:-
Coord C1 exon
chr26:25941158-25941231
Coord A exon
chr26:25940868-25941157
Coord C2 exon
chr26:25940666-25940867
Length
290 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ACCAGGCGTTTTTCTGCCAGGGT
3' ss Score
6.24
Exon sequences
Seq C1 exon
GACGGAGACGTGCAGAGGCACCTCTACCTCCAGGATGTGATTACGCAGGTGGCTGCGGAGCCGGAGAGGCCCAG
Seq A exon
GTGAGTGCTGTGGCCCAGCTCAGGGCCCTTCTTGCCCTCTCCTCACCCCTCCCTCTGCTCGCCCCACCCTGGTGTCTGGCCTGGACCACTGAGAAGCCAGCATGGCTGGCCTCTACACCAGCTTGCTTGTCCGTGAAGATGTATTTGTAATGAAGGCAGGGCTTGGGATTCCAAGAGAAAATCCGAAGCTTTATCAGCTTTATCCCAAGCCACTTGAGGGGAGTGGTGACAGGGAGCCTGACGTCCTGCCCTCCGAGGAATTGCATCCCCACCAGGCGTTTTTCTGCCAG
Seq C2 exon
GGTGCCTGAGTTCACCTGTCAGGTGGCCGGCTGCTGCCAGGCGTTTGACACTCTGGAGGACTATGAGCATCACTACCACACTCTGCACGGAAACGTCTGCTCCTCCTGCAAGCGGGCCTTCCCCTCTGGTCACCTGCTGGACACCCACATCCAGGAGTGGCACGACTCACTGTTCCAGATCCTGGCTGAACGGCAGGACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012416:ENSBTAT00000016475:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACCTCTACCTCCAGGATG
R:
CATGTCCTGCCGTTCAGCC
Band lengths:
260-550
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]