MmuEX0053455 @ mm9
Exon Skipping
Gene
ENSMUSG00000078768 | Zfp566
Description
zinc finger protein 566 [Source:MGI Symbol;Acc:MGI:1919806]
Coordinates
chr7:30866110-30875529:-
Coord C1 exon
chr7:30875307-30875529
Coord A exon
chr7:30872119-30872178
Coord C2 exon
chr7:30866110-30866236
Length
60 bp
Sequences
Splice sites
3' ss Seq
CTGTTCTTTGTCTCCCCCAGTTC
3' ss Score
11.22
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
AAGAGGGGAGGTGCACTGAAGGATTGCAGGGCTTTGGCAGCTTGCAAGGAAGGCCTTTGGTGCGGAACCCGGGAGGAGGCGGGGCGAACGCCGAGGCTGGGCTTTGTGCGGCAGAGGAGTCGGAATTGTGCGGCTAATTTGTGAACAGTGATCGCGGCGCTAAGGGGCTGGACTGGTGATGAGCATCAGTTTCTGCTAACACCGTGGCGGCCACCACCCCTTG
Seq A exon
TTCTCCCCCGTTCCAGAAGAGCAGCACAGAGGACCTGTCACCATCAAAGCCATGGCTCAG
Seq C2 exon
GTGTCAGTGCTGTTCCACGATGTGTACATAGACTTCTCTCAGGAGGAGTGGGAGTGCCTGACTGAGGAGCAGAGAGATCTGTACAGAGATGTGATGTTGGAGAATTACAGCAACCTGCTCTCAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078768-'0-2,'0-0,2-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGAGGAGTCGGAATTGTG
R:
ATCGTGGAACAGCACTGACAC
Band lengths:
135-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: