BtaEX0041396 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000031686 | ZNF566
Description
Bos taurus zinc finger protein 566 (ZNF566), mRNA. [Source:RefSeq mRNA;Acc:NM_001077017]
Coordinates
chr18:47237081-47250339:+
Coord C1 exon
chr18:47237081-47237226
Coord A exon
chr18:47247331-47247403
Coord C2 exon
chr18:47250213-47250339
Length
73 bp
Sequences
Splice sites
3' ss Seq
CTTCTTTCTGTCTTCTCCAGCTC
3' ss Score
11.46
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GCGCTGGCGGGACCCTCAGGTCTGCACCAGCTAGTGTTATCTTGTTGTGGAAGGTTCAGCTTCTTAGGAAGCTTGGGAGACCTGAAGTGGGGAATCAGAGAAGAGGGCGGGGCCGGAGCTTAGGCCTTGTACCGCTCGCTGAAGAG
Seq A exon
CTCTGCTTCTTTCCAAAAAAGGAGCCCAGAGAAGAACTGGTCCTTTTCTGCAAATATCAAAGCCATGGCTCAG
Seq C2 exon
GAGTCAGTGATGTTCAGTGATGTGTCCATAGACTTCTCTCAGGAGGAGTGGGAATTCCTGAATGATGATCAGAGAGATTTATACAGAGATGTGATGTTGGAGAATTACAGCAACCTGGTTTCAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000031686-'0-5,'0-4,5-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTCTGCACCAGCTAGTGTT
R:
CCCACTCCTCCTGAGAGAAGT
Band lengths:
181-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development