RnoEX0101519 @ rn6
Exon Skipping
Gene
ENSRNOG00000048138 | Zfp566
Description
zinc finger protein 566 [Source:RGD Symbol;Acc:1563239]
Coordinates
chr1:88420419-88428685:-
Coord C1 exon
chr1:88428513-88428685
Coord A exon
chr1:88425456-88425515
Coord C2 exon
chr1:88420419-88420545
Length
60 bp
Sequences
Splice sites
3' ss Seq
CCGTTGTTTGTCTCCCCCAGTTC
3' ss Score
10.11
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GTGGCGTGGAACCCGCGAGGAGGCGGGGCGAACACCCAGGCCGGGCTTTGTGTGGCGGAGGAGTTGAAGTCGGAATTGTGCAGCTATTTTGTGAGCACTGATCGCGGCGCTGAGGAGCTAGACTGGTGATGAGCATCTGTTTCTGCTAACAGCTTGGCGGGCATCACCCGTTG
Seq A exon
TTCCACCCTGTTCCAGAGGAGCAGCACAGAGGACCTGCCACTATCAAGGTCATGGCTCAG
Seq C2 exon
GTGTCAGTACTGTTCCATGATGTGTACATAGACTTCTCTCAGGAGGAGTGGGAGTGCCTGACTGAGGAGCAGAGAGATTTATACAGAGATGTGATGTTGGAGAATTACAGCAACCTGCTTTCAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000048138-'0-3,'0-1,2-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.500 C2=0.122
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAGGAGCTAGACTGGTGA
R:
TCTCTCTGCTCCTCAGTCAGG
Band lengths:
142-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]