MmuEX0053455 @ mm10
Exon Skipping
Gene
ENSMUSG00000078768 | Zfp566
Description
zinc finger protein 566 [Source:MGI Symbol;Acc:MGI:1919806]
Coordinates
chr7:30081091-30090527:-
Coord C1 exon
chr7:30090288-30090527
Coord A exon
chr7:30087100-30087159
Coord C2 exon
chr7:30081091-30081217
Length
60 bp
Sequences
Splice sites
3' ss Seq
CTGTTCTTTGTCTCCCCCAGTTC
3' ss Score
11.22
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
TTCAGAGCTTTGCTGGCAAGAGGGGAGGTGCACTGAAGGATTGCAGGGCTTTGGCAGCTTGCAAGGAAGGCCTTTGGTGCGGAACCCGGGAGGAGGCGGGGCGAACGCCGAGGCTGGGCTTTGTGCGGCAGAGGAGTCGGAATTGTGCGGCTAATTTGTGAACAGTGATCGCGGCGCTAAGGGGCTGGACTGGTGATGAGCATCAGTTTCTGCTAACACCGTGGCGGCCACCACCCCTTG
Seq A exon
TTCTCCCCCGTTCCAGAAGAGCAGCACAGAGGACCTGTCACCATCAAAGCCATGGCTCAG
Seq C2 exon
GTGTCAGTGCTGTTCCACGATGTGTACATAGACTTCTCTCAGGAGGAGTGGGAGTGCCTGACTGAGGAGCAGAGAGATCTGTACAGAGATGTGATGTTGGAGAATTACAGCAACCTGCTCTCAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078768-'0-1,'0-0,1-1=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAGAGGAGTCGGAATTGTG
R:
ATCGTGGAACAGCACTGACAC
Band lengths:
135-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types