MmuEX0053628 @ mm10
Exon Skipping
Gene
ENSMUSG00000003929 | Zfp81
Description
zinc finger protein 81 [Source:MGI Symbol;Acc:MGI:1890752]
Coordinates
chr17:33336455-33358878:-
Coord C1 exon
chr17:33358734-33358878
Coord A exon
chr17:33336722-33336848
Coord C2 exon
chr17:33336455-33336509
Length
127 bp
Sequences
Splice sites
3' ss Seq
ATGTATGTGGATTATTTTAGGAA
3' ss Score
7.28
5' ss Seq
TAGGTAAAA
5' ss Score
6.02
Exon sequences
Seq C1 exon
AGTCAGAGGGTGCCGCCATTGCCGCCCTGTTTGAGTCCTGTGTAGCTCCAGGGAGGCAGGTGGTGACTTGGCCTGAGTCGCTGTCCCTTCTGCTGATTGTAGGCCCTTTAGGAAGCACACTGCTCGCGTGTGAAATCAGGAAATG
Seq A exon
GAACCAGTGACCTTTGAGGATGTGGCTGTGAACTTCACCTTAGGAGAGTGGGCTTTGTTGGATTCTTATCAAAAGGAGCTCTACAGAGATGTGATGAAGGAAACCTTTAGCAACCTGATCTCCATAG
Seq C2 exon
GGAAAAGCGAGGAAGACAATATTGAAGATTACCAAAATATTAGGAGAAATTTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000003929_MULTIEX1-2/3=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=95.3)
C2:
PF0135222=KRAB=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAGAGGGTGCCGCCATT
R:
TGGTAATCTTCAATATTGTCTTCCTC
Band lengths:
178-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types