MmuEX0053727 @ mm10
Exon Skipping
Gene
ENSMUSG00000072774 | Zfp951
Description
zinc finger protein 951 [Source:MGI Symbol;Acc:MGI:2441896]
Coordinates
chr5:104813169-104817123:-
Coord C1 exon
chr5:104816997-104817123
Coord A exon
chr5:104816699-104816759
Coord C2 exon
chr5:104813169-104815435
Length
61 bp
Sequences
Splice sites
3' ss Seq
TTTTTGGTACTATGTTTTAGGCT
3' ss Score
8.17
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
AATGCAGTGACATATGAGGATGTGCATGTGAACTTTACTCGGGAAGAATGGGCTTTGCTGGATCCTTCCCAGAAGAGTCTCTACAAGGATGTGATGCTGGAGACCTACAGGACCCTCAGAGCTATAG
Seq A exon
GCTGTTATTGGGAAGACCACAGTAATGAAGAAAATTCTCAAACTTCTAGAAGACATGGAAG
Seq C2 exon
GCATCTTCAAATGGAAGACAGAACTCATACTGGAGATAAAAGCTATGAAGGTGTGCAATGTAACAAAGTGCTTTCGAGTCACAATCATGCTCAGATATATAAAGGAATGCTTACTGGAGCCTTTGTACTTTATACTGGTGGTCAAATGCATAGCAGAACACAGGCAGGGGATAAGCCCTGTGACTGTAACACACTTGGTAAATCCTGTACATGCAACAGCCATCTGCAAAGCCATAAAAGAACAGATACTAGAGAGAATCCTTATAAATGTAATCACTGTGGTAAAGCCTTTGCTCGTCACAGGGATCTTCAAAACCATGAAAGGACACATACTGGAGAGAAGCCCTATGAATGTAAGCAATGTGGTAAAGCCTTTGCTCTTAACAGCTATCTCCATATCCATGAAAGGACACATACTGGAGAAAAGCCCTTTGAGTGTAGCCAATGTGGTAAAGCCTTTGCTTGTCATAGCCATCTTCAAAGCCATAAAAGAACACATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000072774-'15-13,'15-12,16-13
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.524 C2=0.071
Domain overlap (PFAM):
C1:
PF0135222=KRAB=WD(100=95.3)
A:
PF0135222=KRAB=PD(0.1=0.0)
C2:
PF134651=zf-H2C2_2=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=6.8),PF134651=zf-H2C2_2=WD(100=7.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCTACAGGACCCTCAGAGC
R:
AGGCTCCAGTAAGCATTCCTT
Band lengths:
148-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types