MmuEX1002439 @ mm10
Exon Skipping
Gene
ENSMUSG00000073821 | 8030451A03Rik
Description
RIKEN cDNA 8030451A03 gene [Source:MGI Symbol;Acc:MGI:1915353]
Coordinates
chr4:64121697-64138007:+
Coord C1 exon
chr4:64121697-64121823
Coord A exon
chr4:64124480-64124656
Coord C2 exon
chr4:64137956-64138007
Length
177 bp
Sequences
Splice sites
3' ss Seq
TTCTTTGGTATTTTTTATAGGTC
3' ss Score
9.67
5' ss Seq
AAAGTACAA
5' ss Score
-1.85
Exon sequences
Seq C1 exon
ATAATTCTGCCTCAGAGTTCAAGAGCTCACATGCCATGAGGACACTCAAGCAGTGCTGAGAGGAACAGTCAACAATGGCTCCTGGACCACGTGAGTGAAGCATCTTGGCAGTAGAATCTAGCCCAAG
Seq A exon
GTCCTGAAACAAGAGATTTGGAAGTTGAGATTTTTACATCCATCAGAGGCACAGAGGGAGCACAGACTGGGGCAGAGAGGGAACCAAGGCATGACTCAAGGGATGCTATTGAGTCATAGCAGACAGAGACTCTTCAACCTTGTAAATGAAGTCATGCTTTGTCTGCAATCAGAGAAA
Seq C2 exon
ACACGATAATAAAGAAATCAGCATCTGGAGGACTCCCAGGAGGCAAGCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000073821-'22-27,'22-26,23-27
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAATTCTGCCTCAGAGTTCAAGAGC
R:
CTTAGCTTGCCTCCTGGGAGT
Band lengths:
178-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types