MmuEX1002440 @ mm10
Exon Skipping
Gene
ENSMUSG00000073821 | 8030451A03Rik
Description
RIKEN cDNA 8030451A03 gene [Source:MGI Symbol;Acc:MGI:1915353]
Coordinates
chr4:64124480-64143188:+
Coord C1 exon
chr4:64124480-64125145
Coord A exon
chr4:64137956-64138007
Coord C2 exon
chr4:64143016-64143188
Length
52 bp
Sequences
Splice sites
3' ss Seq
TGATTTTTCTTTAATTTCAGACA
3' ss Score
8.51
5' ss Seq
AAGGTTAGC
5' ss Score
5.61
Exon sequences
Seq C1 exon
AATCAGAGAAAGTACAAATGCCTGGTTTTGATTTCTTTTTCTTCTTTTATTAGCTTTAAAATGCTAACTAGATCCCCCTCTTCCAGTTCCTCACTTTACCTCCCATTAGGTCTGGGGCTCAATTCCATTTGAAGGAGGTAGAGATCTGGCAATAAGGGATTTACTTCATGTTTCACATTTGAGTCCACTTTTTACAACTTGCTTGTAAAGTTCTGAGAGCTGGTCTAGTGGCGGAAAGGCTGAAGCAGTCCAATGCTAAATGTAGCACTCTAAGCTCCTCGCCTCTTTCTGACATCAGAAGGCAGGGGTCTTTCCTAGAGGCAATGCAGGCTCCTTGTTATTTCTTATGTCAGCACATATGTCTTTTCTGCCAGATGTCAGACCCAGTGAATCACAAAAGCAAAGCAGCTGGCTTGGGGCAGTGGGTAGCCATGGAGAGCAGAGGTAGAATCAACGCCTTAGTAGCCAGGAGCAGGAGCCATTCAGAGTCTACTCCACGG
Seq A exon
ACACGATAATAAAGAAATCAGCATCTGGAGGACTCCCAGGAGGCAAGCTAAG
Seq C2 exon
GTATCCAGTCTTCTGTCATTTATAACAGATTTTAAAAGGCTTATCAGCAAACATGAGAGCAGGAAAATAATCTCCTTTGTATGTGAACAGGCTGGGGCTCAGAGAGAGGAGCCAAACTTACCGAGATCATATGGCCAGGAAGCACCAAGGCTTGTCATGGAGCCCAGATGGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000073821-'24-28,'24-27,25-28
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAACGCCTTAGTAGCCAGGA
R:
CCCCAGCCTGTTCACATACAA
Band lengths:
147-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types