MmuEX7002364 @ mm10
Exon Skipping
Gene
ENSMUSG00000073821 | 8030451A03Rik
Description
RIKEN cDNA 8030451A03 gene [Source:MGI Symbol;Acc:MGI:1915353]
Coordinates
chr4:64079366-64149924:+
Coord C1 exon
chr4:64079366-64079471
Coord A exon
chr4:64121697-64121823
Coord C2 exon
chr4:64147774-64149924
Length
127 bp
Sequences
Splice sites
3' ss Seq
TTTCCACCTTTGTATTTTAGATA
3' ss Score
10.66
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
AAGAATAAATTCTATCTCCTAGTAATCCACCTTGCAATCAACTCTTGATTTCCTGGCTATCAGAATTTGACTTCTACAGTCAGTTCATACAACAGTGTGATCTGAG
Seq A exon
ATAATTCTGCCTCAGAGTTCAAGAGCTCACATGCCATGAGGACACTCAAGCAGTGCTGAGAGGAACAGTCAACAATGGCTCCTGGACCACGTGAGTGAAGCATCTTGGCAGTAGAATCTAGCCCAAG
Seq C2 exon
AGAGAGGAGAGGCATGCTTTGTGTTGGGCTCTGCATTCTTGGGCAGCTGAAGCAGAGTGAGAAACTGGCTGATGTGGAGAGGCTCTTACATCCAGGGCTTGGACTTCCGGCTTGCTGAATGGAAGTGATGAGCCTTCCCCACGCCCTCTCCCCTTTTGGATCCACGTTGCTATCTGTGTCAGAAGGCTCTGGAAAATTTACACCTGCACACCTGCTCCGTTTTGTGTTCCTCTTGATTTTATGAGTGGACAGCTGTGAGCTACAAGGAGCTCAACAGTTTAGAACCCCTCCCGCAACACGACATGAGAAGACACGGTTTCCCTCTCCTTTTCCACACTCCAGGCTCTGCATGAGACGTGTGAAGGCTGTCTTCCCAGCTTGTCACATATAATTAGGATTTCTGAGACTTCTTCAGAGAAAGAAAAGGGTTGTAATTTTCTGATGTCACTGAGTCATTTTGGTATAACTTTCTTGTTCTTATTGAGGTGGAATGTGTGTTTGTGTATATGTGTGTATGTAAGTGTAACATACATGTATATATACACACATATGTAACATGTGTATGTGTGCATGCATGTGTGTTGTATGTGGAATGTAGTAACATTTAAGGAAATGGATATAAAGTGTTTTTAGACTTGTCTCAGTCCAGTTATCTGCTTCCCTGAGGGCTATGTCATTCCCTGTGCCCAACAAAGTGTCCTGAGACATTTCCTGTTATGTATTCTCTGCCACTTGTATAGTTATTTGTTTTGTCCTCACAACACAGTTCAGCTCTGTCCATGGGATGGGGCAAATGGGTACAGTCTTTTTATAACTTGATTGGACACATCAGTATGAAGGCAGAATTAAAAAGAAAACACTATTTCATTTACTTTAATTATTATAAAATCTTCAGAAGAGAACTAGGTATTCTGGATTTATGTTTTGCATATAGCAGTTGTTTTTTAAAAAACAGAAAAATCATGTTTAATAATGCGAACATTGTTTTCTCTTGTGCTATGGAAGCTAGTTCAGTATGTGTGTACTTAAATAAGAGGAAAGAGGCTGGAAGCAAAATAATGTTCTGGTCTCTACCCAAAACATCCCTTTTTTTTCCTCCCTCTTTGCAAAGTCTTAAAGTCTTAAAAGCTGTGGTGATTAGCTTCCACACTTCTTTCCTAAATGCAAAGTGAGATGCTGGTTTATGGACCAGAATGAAAAAAACCAAGAAGAGCTGAGACTCTCACGGGACAGCTTGCCAGTGAAGTCTTCCAAGTCCAAGAAGCTTTACAGAAGTTGGAGGTGCCCTGGAAAGGGACCAACAGCCTTTTCAGCTCTTTACCCATCACTAATTCTGGCTCCAGCTGGACTCCGGCTTGCTGATGAAAGGGAATGAAAGCCGTGGGCCTCCAAGGGCATTTTGGATGGAATCTATTCAGTCTGCATTTACTTGCGCTGCATTATGAAATCTCCATGACAACAGGCACATGTCTCAGTGTGTTACATGGAGAAGGACTCTACTTTGTCAGGAGAATCTGATCATGTGCCACTTCCTTCCTGGGTGTTGGAATGGGTTCCACCTGGAGTTGGTTTCCCCTCATCCAAGATGATGGTAATACAGAAAGATATCTGAGGCCAGCATCCAAATTCCTGAAACCACCATAGATCCCACTGGAGACATGTGGGAATGGAGTTTGCTTCGGTGGCAGTTGGCAAGCATGGCACTGATGAGAAGTTGAGGCTGAGGCACCCTTTCTGCTTCAGTTGGCTCTCTGATTTGGCTGGTTTCTGAAAGTTATGAGATGAAAGGGTGGGCGAGACTCTGGCCATCATTATTCTGCTCTGAGAAGTATGATTTTTGAAGCTGCTAATACTAAATAAGTCTCACACAACATCCTGAAATTATTGTCCCCCAAACTGTCTGTCTTTAGTCATTTTACAAGCCTGAGAGATGTCTACAACAACAACAAAACAGAACACTGCAAAACAAAAAAGCAGAGTATTGGTCAGAAGAAAAGCTAGTTCTCATCAGCTACAGTACCCATACTAGAATTATCTACCATATGAGATATTTTAAGGAAAATAATTGATTCTCATTTTCAGCATGCTTAGTTATTAATCTCCCAAAGGAGACAACTATTATGTTTCTGGAAAATAAAAAACCTGATTTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000073821-'19-30,'19-24,22-30=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTGCATGTGTGTGTGTGT
R:
ACGTGGATCCAAAAGGGGAGA
Band lengths:
244-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types