MmuEX1003890 @ mm10
Exon Skipping
Gene
ENSMUSG00000022237 | Ankrd33b
Description
ankyrin repeat domain 33B [Source:MGI Symbol;Acc:MGI:1917904]
Coordinates
chr15:31304992-31367726:-
Coord C1 exon
chr15:31367039-31367726
Coord A exon
chr15:31324710-31325056
Coord C2 exon
chr15:31304992-31305132
Length
347 bp
Sequences
Splice sites
3' ss Seq
GGCCTTTATTCTCCCTCCAGGGC
3' ss Score
10.34
5' ss Seq
AAGGTGACC
5' ss Score
6.78
Exon sequences
Seq C1 exon
GGAGCTGCTTTCTGCCAGGCTGGAGCGCGCGGGGCTCCTGCTCTTCTGCGAACGCAGGGGCCAAGGGTCGGTGACCTCCGGGCGCGCCCCGTTTTCGTGTCCCCTAATTCGAGCCCCAGCCCCCGGCCCGCGCCTTGGCCTCCAGCATGGTGCTGCTGGCTGGGCCCGGGCCGGAGGGCGGCGGGACACGCTGCTTGTCCCCGCAGTCGCCGACGCCACCCCGTAGCGAGCAGACAGGAGAAGACCCAGCGGACTACGAGGAGTACGAAGACTTCTCTAGTCTGCCGGACACCCGCAGCATCGCATCGGACGATTCCTTCTACCCTCCCGGAGGCGAGGAAGAGTACGGCTCGGTGAGCGCGGAGAGCGTCCCGGAGGGCGTCCCTGAGGCGGCGACCCTCCTGCGCGCCGCCTGCGCCAACGACGTGGGGTTGCTGCGGGCGCTAGTGCGGCGCGGGCCGAGTTCCGAGGAGGTACGGGAGACTGACCGCAACGGCCGG
Seq A exon
GGCTCTGCTGCTGGGCCGTATGGGCTCCGGTGACTCCTGGATGCATCCCACAGATCTGGAAATGGATTCGCCTAGAGCTGCGCTGGGAAGGGGCTGACTGGCATGCAGGAGGGAGCGCGCATCTCTCTGTGTGCTCTTGGAACAGCACACTTAGCCACCGAATCAGGAAGGATTCAGAATGGAGCTGCCACCAGCTAGAGTCTTCACCGTAGAGCCACCTCCGGAAGGCAGGCTTGCCTGCCTCTCAGAGCACTGACAACCCTGGAGACTGGGCGGCGTGGTACTGGTGGCCTGGAGCCACAGTCTCGTGCTTTACTGACAGTTATGTAATTAGATCCACTGAGAAG
Seq C2 exon
GGCATGTCACCATCACCAACTACTTGCTGAATTATTTCCCTGGTCTGGACCTAGAAAGGAGGAACATATTTGGATTCACGGCCCTCATGAAAGCGGCCATGCAGGGCAGAACGGAATGTGTGCGAGCCCTTATGATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022237_MULTIEX1-2/3=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.844 A=1.000 C2=0.086
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(33.3=28.0)
A:
NO
C2:
PF127962=Ank_2=PD(23.3=43.8),PF127962=Ank_2=PU(47.1=68.8)
Main Inclusion Isoform:
ENSMUST00000044324fB5835
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAGACCCAGCGGACTAC
R:
CATGAGGGCCGTGAATCCAAA
Band lengths:
353-700
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types