MmuEX0005113 @ mm10
Exon Skipping
Gene
ENSMUSG00000022237 | Ankrd33b
Description
ankyrin repeat domain 33B [Source:MGI Symbol;Acc:MGI:1917904]
Coordinates
chr15:31304992-31367726:-
Coord C1 exon
chr15:31367039-31367726
Coord A exon
chr15:31325086-31325215
Coord C2 exon
chr15:31304992-31305132
Length
130 bp
Sequences
Splice sites
3' ss Seq
CTTCCCCTCTTCATTTCTAGACT
3' ss Score
11.3
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GGAGCTGCTTTCTGCCAGGCTGGAGCGCGCGGGGCTCCTGCTCTTCTGCGAACGCAGGGGCCAAGGGTCGGTGACCTCCGGGCGCGCCCCGTTTTCGTGTCCCCTAATTCGAGCCCCAGCCCCCGGCCCGCGCCTTGGCCTCCAGCATGGTGCTGCTGGCTGGGCCCGGGCCGGAGGGCGGCGGGACACGCTGCTTGTCCCCGCAGTCGCCGACGCCACCCCGTAGCGAGCAGACAGGAGAAGACCCAGCGGACTACGAGGAGTACGAAGACTTCTCTAGTCTGCCGGACACCCGCAGCATCGCATCGGACGATTCCTTCTACCCTCCCGGAGGCGAGGAAGAGTACGGCTCGGTGAGCGCGGAGAGCGTCCCGGAGGGCGTCCCTGAGGCGGCGACCCTCCTGCGCGCCGCCTGCGCCAACGACGTGGGGTTGCTGCGGGCGCTAGTGCGGCGCGGGCCGAGTTCCGAGGAGGTACGGGAGACTGACCGCAACGGCCGG
Seq A exon
ACTGGCCTTATTGTTGCGTGCTACCATGGCTTTGTGGATACCGTGGTGGCCTTAGCAGAGTGTCCCCACGTTGACGTCAACTGGCAGGACAGCGAAGGGAACACAGCCCTGATCACTGCTGCACAGGCAG
Seq C2 exon
GGCATGTCACCATCACCAACTACTTGCTGAATTATTTCCCTGGTCTGGACCTAGAAAGGAGGAACATATTTGGATTCACGGCCCTCATGAAAGCGGCCATGCAGGGCAGAACGGAATGTGTGCGAGCCCTTATGATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022237_MULTIEX1-1/3=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.844 A=0.000 C2=0.086
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(33.3=28.0)
A:
PF127962=Ank_2=FE(47.8=100)
C2:
PF127962=Ank_2=PD(23.3=43.8),PF127962=Ank_2=PU(47.1=68.8)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCTAGTCTGCCGGACACC
R:
GCAAGTAGTTGGTGATGGTGACA
Band lengths:
255-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types