GgaEX7002091 @ galGal4
Exon Skipping
Gene
ENSGALG00000027521 | ANKRD33B
Description
ankyrin repeat domain 33B [Source:HGNC Symbol;Acc:HGNC:35240]
Coordinates
chr2:78180064-78211788:-
Coord C1 exon
chr2:78211360-78211788
Coord A exon
chr2:78184930-78185059
Coord C2 exon
chr2:78180064-78180204
Length
130 bp
Sequences
Splice sites
3' ss Seq
TCTTTCTATTTTGCTTACAGAAT
3' ss Score
9.32
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
ATGGTGCTGCTGTCGGGGGCCGGGGAGCAGCTGGCCGGTGAGCGGGTCTGCCCCGCGCCGGGCGCCGGCAAGGAGCTGCCCGAGGCGGAGAGCGGTTCCGAACAGGGGGCGGAAGGGGCTGCCGCCGAGGGGCACGGCGATGAGGAGCAGGAGGAGGAGGAGGAGGAGGAGGAGGACTGCGAGGAGTATGAGGACTTCTCCGAGCTGCCCGACACCTGCAGCATCGCCTCGGACGACTCCTTCTACCCGCCGGGGGGGCTGGAGGACGAGACGGAGGACAGCTGGTCCCTGGAGCAGGAGGACCGCGACAGCCCCGAGGCGCTGAGCCTCTTCCGAGCGTGCTGCACCAACAACGCCGTGGTGCTGCGGGCGCTCATCCGGCAGGGCCCCGAGGAGGAGGAGGTGCGGGAGACCGACCGCAACCGCAGG
Seq A exon
AATGGTCTCATCGTCGCCTGTTACCAAGGGTATGTGGATATTGTCATAGCCTTATCACAGTGCCCTCACCTCGATGTGAACTGGCAGGACAATGAAGGGAACACGGCCCTGATCACAGCTGCGCAGGCAG
Seq C2 exon
GGCACATAACCATTACAAACTATTTGTTGAACTATTTCCCTGGGCTTGACATTGAGAAGAGGAATGTGTTTGGATTTACAGCACTGATGAAATCTGCGATGCAGGGACGAACGGAATGCGTGAAAGCCTTGATGATGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027521-'2-4,'2-1,4-4=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.818 A=0.011 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(40.2=23.1)
A:
PF127962=Ank_2=PU(42.7=93.2)
C2:
PF127962=Ank_2=FE(49.0=100)
Main Skipping Isoform:
ENSGALT00000044518fB4975
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCGGACGACTCCTTCTACCC
R:
CTCAATGTCAAGCCCAGGGAA
Band lengths:
258-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]