HsaEX0004471 @ hg38
Exon Skipping
Gene
ENSG00000164236 | ANKRD33B
Description
ankyrin repeat domain 33B [Source:HGNC Symbol;Acc:HGNC:35240]
Coordinates
chr5:10564468-10638168:+
Coord C1 exon
chr5:10564468-10564833
Coord A exon
chr5:10618333-10618462
Coord C2 exon
chr5:10638028-10638168
Length
130 bp
Sequences
Splice sites
3' ss Seq
CTTCCCCTCTTCATTTCTAGACC
3' ss Score
11.99
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ATGGTGCTGCTGGCCGGGACCGGGCCGGAGGGCGGCGGGGCGCGCTGCATGACCCCACCACCGCCGTCCCCACCCCGGGGCGCGCAGGTCGAGGAGGACCCCGCTGACTACGAAGAGTTTGAGGACTTCTCGAGTCTGCCAGACACCCGCAGCATCGCCTCGGACGACTCTTTCTACCCTTTCGAGGACGAGGAGGAGCACGGCGTCGAGAGCGCGGAGAGCGTCCCGGAGGGCGTCCCGGAAAGCGTCCCGGAGACGGCGACCCTCCTGCGCGCCGCCTGCGCCAACAACGTGGGGCTGCTGCGGACGCTGGTGCGGCGCGGGGTGAGCGTCGAGGAGGCGCAGGAGACTGACCGCAACGGCAGG
Seq A exon
ACCGGCCTTATTGTCGCCTGCTACCACGGCTTTGTGGATACCGTGGTGGCCTTAGCAGAGTGCCCCCACGTTGACGTCAACTGGCAGGACAGCGAGGGGAACACAGCCCTAATCACAGCTGCACAGGCAG
Seq C2 exon
GGCACGCTATCATCACTAACTACTTGTTGAACTATTTCCCTGGTCTTGACCTTGAAAGGAGGAACGCGTTCGGGTTCACCGCCCTGATGAAAGCCGCCATGCAGGGTCGAACGGACTGCATCCGAGCCCTGATGCTAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164236_MULTIEX1-1/4=C1-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.721 A=0.038 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(33.3=27.0)
A:
PF127962=Ank_2=FE(43.4=100)
C2:
PF127962=Ank_2=PD(21.2=43.8),PF0002325=Ank=PU(72.7=50.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGACGAGGAGGAGCACG
R:
GCGTTCCTCCTTTCAAGGTCA
Band lengths:
250-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development