RnoEX0009640 @ rn6
Exon Skipping
Gene
ENSRNOG00000010888 | Ankrd33b
Description
ankyrin repeat domain 33B [Source:RGD Symbol;Acc:1564227]
Coordinates
chr2:84373158-84436912:-
Coord C1 exon
chr2:84436559-84436912
Coord A exon
chr2:84393970-84394099
Coord C2 exon
chr2:84373158-84373298
Length
130 bp
Sequences
Splice sites
3' ss Seq
TTTCCCCTCTTCATTTCCAGACT
3' ss Score
11.55
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
ATGGTGCTGCTGGCTGGGCCCGGGCCGGAGGGCGGCGGGACACGCTGCTTGTCCCCACAGTCGCCGACGCCACCCCGGAGCGTACAGACAGGGGACGACCCAGCGGACTACGAGGAGTACGAAGACTTCTCGAGTCTGCCGGACACCCGCAGCATCGCATCGGACGATTCCTTCTACCCTCCGGGAGGCGAGGAGGAGTGCGGCTCGGTGTGCGCGGAGAGCGTCCCGGAGGGCGTCCCTGAGTCGGCGACCCTCCTGCGCGCCGCCTGCGCCAACGACGTGGGGCTGCTGCGGGCGCTAGTGCGGCGCGGACCTAGTTCCGAGGAGGCACGGGAGACTGACCGCAACGGCCGG
Seq A exon
ACTGGCCTTATTATTGCGTGCTACCATGGCTTTGTGGATACCGTGGTGGCCTTAGCAGAGTGTCCCCACATCGACGTCAACTGGCAGGACAGCGAAGGGAACACAGCCCTGATCACTGCTGCCCAAGCAG
Seq C2 exon
GGCATGCCACCATCACCAACTACTTGCTGAATTATTTCCCCGGTCTGGACCTAGAAAGGAGGAACATATTCGGCTTCACAGCTCTCATGAAGGCAGCCATGCAGGGTAGAACAGAATGTGTGCGAGCCCTGATGCTAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010888_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.689 A=0.068 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(33.3=28.0)
A:
PF127962=Ank_2=FE(43.4=100)
C2:
PF127962=Ank_2=PD(21.2=43.8),PF127962=Ank_2=PU(46.5=68.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGATTCCTTCTACCCTCCGG
R:
GGTCCAGACCGGGGAAATAAT
Band lengths:
242-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]