DreEX6027500 @ danRer10
Exon Skipping
Gene
ENSDARG00000015589 | ankrd33bb
Description
ankyrin repeat domain 33Bb [Source:ZFIN;Acc:ZDB-GENE-070912-531]
Coordinates
chr2:30548193-30563734:+
Coord C1 exon
chr2:30548193-30548448
Coord A exon
chr2:30560363-30560492
Coord C2 exon
chr2:30563594-30563734
Length
130 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTCTTTGCTTAACAGACA
3' ss Score
10.26
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
TGACGATGATGATGTCTACCAGGAGTTTGAGGAGTTGGACTTCTCAAAACTTCCAGATAGCAGAAGCATGGCATCAGATGACTCCTTCTACCCACCTGATGATTCGCTCAGCTTCGAGAAATGCCCGAGTCCTGAGAGCCCAGAGCCAGTCAGCTTTTTCAAGGCATGCTGCAGCAACAACGTCATCATCGTCAAGATCATGATAAGACAAGGTGTGACTGAGGCAGAGGTGCGAGAAGTGGACAAAAATAACAGA
Seq A exon
ACAGGTCTGATAGTGGCGTGTTACCAGGGCTACGTGGATGTGGTCATTGCACTGTCCCAGTGCCCACATGTGGACGTGAATTGGCAGGATAATGAAGGGAATACAGCTCTCATTAATGCTGCACAAGCAG
Seq C2 exon
GCCACAGTATGATTACACACTACTTGCTAAACTATTTTCCTGGGATTGACACTGAGCGTAGGAACTGCCATGGCTTCACGGCGTTGATGAAAGCAGCCATGCAGGGTCGAGCTGAATGTGTGCGGTCTCTCATGATGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000015589-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.128 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(32.7=37.2)
A:
PF127962=Ank_2=FE(43.9=100)
C2:
PF127962=Ank_2=PD(22.4=45.8),PF0002325=Ank=PU(69.7=47.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGAGAAATGCCCGAGTCC
R:
CATGGCTGCTTTCATCAACGC
Band lengths:
246-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]